Strain identifier
BacDive ID: 23838
Type strain: 
Species: Chlamydia psittaci
Strain Designation: 07DE0014, DC60, 08DC60
Strain history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 08DC60 <- S. Scharf
NCBI tax ID(s): 83554 (species)
version 8.1 (current version)
General
@ref: 21075
BacDive-ID: 23838
DSM-Number: 27007
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Chlamydia psittaci 07DE0014 is a mesophilic bacterium that was isolated from bronchoalveolar lavage from psittacosis patient.
NCBI tax id
- NCBI tax id: 83554
- Matching level: species
strain history
- @ref: 21075
- history: <- K. Sachse, Friedrich-Loeffler-Institut, Jena, Germany; 08DC60 <- S. Scharf
doi: 10.13145/bacdive23838.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/chlamydiota
- domain: Bacteria
- phylum: Chlamydiota
- class: Chlamydiia
- order: Chlamydiales
- family: Chlamydiaceae
- genus: Chlamydia
- species: Chlamydia psittaci
- full scientific name: Chlamydia psittaci (Lillie 1930) Page 1968 (Approved Lists 1980)
synonyms
@ref synonym 20215 Rickettsia psittaci 20215 Chlamydophila psittaci
@ref: 21075
domain: Bacteria
phylum: Chlamydiae
class: Chlamydiia
order: Chlamydiales
family: Chlamydiaceae
genus: Chlamydia
species: Chlamydia psittaci
full scientific name: Chlamydia psittaci (Lillie 1930) Page 1968
strain designation: 07DE0014, DC60, 08DC60
type strain: no
Morphology
colony morphology
- @ref: 21075
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 21075
- name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1193
- composition: Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium
culture temp
- @ref: 21075
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21075
- sample type: bronchoalveolar lavage from psittacosis patient
- geographic location: Rostock, Univ. Hospital
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 54.0924
- longitude: 12.0991
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Oral cavity and airways | #Lung |
| #Infection | #Medical environment | #Medical practice |
| #Infection | #Disease |
Safety information
risk assessment
- @ref: 21075
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21075
- description: Chlamydia psittaci 08DC60, complete sequence
- accession: NC_017290.1
- length: 1172032
- database: nuccore
- NCBI tax ID: 1112267
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chlamydia psittaci 08DC60 | GCA_000270445 | complete | ncbi | 1112267 |
| 66792 | Chlamydia psittaci 08DC60 | GCA_000415705 | scaffold | ncbi | 1112267 |
| 66792 | Chlamydia psittaci 08DC60 | 1112267.4 | wgs | patric | 1112267 |
| 66792 | Chlamydia psittaci 08DC60 | 1112267.5 | complete | patric | 1112267 |
| 66792 | Chlamydia psittaci 08DC60 | 651053014 | complete | img | 1112267 |
| 66792 | Chlamydia psittaci 08DC60 | 2541047484 | draft | img | 1112267 |
GC content
- @ref: 21075
- GC-content: 39.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 69.224 | no |
| flagellated | no | 96.502 | no |
| gram-positive | no | 96.321 | no |
| anaerobic | no | 62.74 | no |
| aerobic | no | 91.07 | no |
| halophile | yes | 60.184 | no |
| spore-forming | no | 97.513 | no |
| thermophile | no | 79.437 | yes |
| glucose-util | yes | 77.561 | no |
| glucose-ferment | yes | 51.093 | no |
External links
@ref: 21075
culture collection no.: DSM 27007
straininfo link
- @ref: 87860
- straininfo: 403431
literature
- topic: Genetics
- Pubmed-ID: 21705611
- title: Complete genome sequences of four mammalian isolates of Chlamydophila psittaci.
- authors: Schofl G, Voigt A, Litsche K, Sachse K, Saluz HP
- journal: J Bacteriol
- DOI: 10.1128/JB.05382-11
- year: 2011
- mesh: Animals, Base Sequence, Cattle, Cattle Diseases/microbiology, Chlamydophila psittaci/*genetics/isolation & purification, Genome, Bacterial, Humans, Mammals, Molecular Sequence Data, Psittacosis/microbiology/*veterinary, Sheep, Sheep Diseases/microbiology, Swine, Swine Diseases/microbiology
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21075 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27007 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27007) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 87860 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403431.1 |