Chlamydia psittaci 07DE0014 is a bacterium that was isolated from bronchoalveolar lavage from psittacosis patient.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Chlamydiota |
| Class Chlamydiia |
| Order Chlamydiales |
| Family Chlamydiaceae |
| Genus Chlamydia |
| Species Chlamydia psittaci |
| Full scientific name Chlamydia psittaci (Lillie 1930) Page 1968 (Approved Lists 1980) |
| Synonyms (2) |
| BacDive ID | Other strains from Chlamydia psittaci (2) | Type strain |
|---|---|---|
| 167826 | C. psittaci 6BC, Psittacosis strain 6 BC, ATCC VR-125 (type strain) | |
| 23839 | C. psittaci 01DE0183, DC15, 02DC15, DSM 27008 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 21075 | CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) | Medium recipe at MediaDive | Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 21075 | positive | growth | 37 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host Body-Site | #Oral cavity and airways | #Lung | |
| #Infection | #Medical environment | #Medical practice | |
| #Infection | #Disease | - |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 21075 | bronchoalveolar lavage from psittacosis patient | Rostock, Univ. Hospital | Germany | DEU | Europe | 54.0924 | 12.0991 54.0924/12.0991 |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 21075 | 2 | Risk group (German classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM27044v1 assembly for Chlamydia psittaci 08DC60 | complete | 1112267 | 99.09 | ||||
| 66792 | ASM41570v1 assembly for Chlamydia psittaci 08DC60 | scaffold | 1112267 | 16.52 |
| 21075 | GC-content (mol%)39.1 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.90 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 77.50 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 84.06 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 65.20 | no |
| 125438 | aerobic | aerobicⓘ | no | 80.16 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 93.85 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.36 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 72.91 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Reliable and Sensitive Nested PCR for the Detection of Chlamydia in Sputum. | Smolejova M, Cihova I, Sulo P. | Microorganisms | 10.3390/microorganisms9050935 | 2021 | ||
| Genetics | Complete genome sequences of four mammalian isolates of Chlamydophila psittaci. | Schofl G, Voigt A, Litsche K, Sachse K, Saluz HP | J Bacteriol | 10.1128/JB.05382-11 | 2011 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #21075 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27007 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive23838.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data