Strain identifier

BacDive ID: 23789

Type strain: Yes

Species: Bifidobacterium moukalabense

Strain Designation: GG01

Strain history: A. Ngomanda GG01.

NCBI tax ID(s): 1435051 (strain), 1333651 (species)

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General

@ref: 20460

BacDive-ID: 23789

DSM-Number: 27321

keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic

description: Bifidobacterium moukalabense GG01 is an obligate anaerobe, mesophilic bacterium that was isolated from feces of wild western lowland gorilla .

NCBI tax id

NCBI tax idMatching level
1333651species
1435051strain

strain history

@refhistory
20460<- A. Ngomanda, Res. Inst. of Tropical Ecology (IRET), Natl. Center of Scientific Res. and Technol., Gabon; GG01 <- K. Ushida, Kyoto Univ., Japan
67770A. Ngomanda GG01.

doi: 10.13145/bacdive23789.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium moukalabense
  • full scientific name: Bifidobacterium moukalabense Tsuchida et al. 2014

@ref: 20460

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium moukalabense

full scientific name: Bifidobacterium moukalabense Tsuchida et al. 2014

strain designation: GG01

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.963
69480100positive

Culture and growth conditions

culture medium

  • @ref: 20460
  • name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/58
  • composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@refgrowthtypetemperaturerange
20460positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
20460obligate anaerobe
69480anaerobe99.999

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
20460----+++---++++----+--+-++++++++++-++++-++---------
20460----+++---++++----+--+/--++++++++++-++++-++---------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
20460feces of wild western lowland gorilla (Gorilla gorilla gorilla)Gorilla gorilla gorillaMoukalaba-Daudou National ParkGabonGABAfrica
67770Feces of a wild lowland gorilla in Moukalaba-Daudou National ParkGabonGABAfrica

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Primates
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 20460
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20460Bifidobacterium moukalabense gene for 16S ribosomal RNA, partial sequence, strain: JCM 18751AB8212931495ena1435051
67770Bifidobacterium moukalabense JCM 18751 gene for 16S rRNA, partial sequenceLC5219931470ena1435051

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium moukalabense GG01TGCA_005405645contigncbi1333651
66792Bifidobacterium moukalabense DSM 273211435051.3wgspatric1435051
66792Bifidobacterium moukalabense DSM 273212609460007draftimg1435051
67770Bifidobacterium moukalabense DSM 27321GCA_000522505contigncbi1435051

GC content

  • @ref: 20460
  • GC-content: 60.1
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.801no
gram-positiveyes89.568no
anaerobicyes98.207yes
halophileno62.434no
spore-formingno94.226no
thermophileno97.854yes
glucose-utilyes87.659no
aerobicno96.893no
flagellatedno96.915no
glucose-fermentyes77.191no

External links

@ref: 20460

culture collection no.: DSM 27321, JCM 18751

straininfo link

  • @ref: 87820
  • straininfo: 406737

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24158945Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla).Tsuchida S, Takahashi S, Nguema PPM, Fujita S, Kitahara M, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida KInt J Syst Evol Microbiol10.1099/ijs.0.055186-02013Animals, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, Chaperonin 60/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Gabon, Genes, Bacterial, Gorilla gorilla/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Genetics24558236The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon.Lugli GA, Duranti S, Milani C, Turroni F, Viappiani A, Mangifesta M, van Sinderen D, Ventura MGenome Announc10.1128/genomeA.00048-142014Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20460Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27321Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27321)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87820Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406737.1