Strain identifier
BacDive ID: 23789
Type strain: 
Species: Bifidobacterium moukalabense
Strain Designation: GG01
Strain history: A. Ngomanda GG01.
NCBI tax ID(s): 1435051 (strain), 1333651 (species)
version 9.3 (current version)
General
@ref: 20460
BacDive-ID: 23789
DSM-Number: 27321
keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic
description: Bifidobacterium moukalabense GG01 is an obligate anaerobe, mesophilic bacterium that was isolated from feces of wild western lowland gorilla .
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1333651 | species |
| 1435051 | strain |
strain history
| @ref | history |
|---|---|
| 20460 | <- A. Ngomanda, Res. Inst. of Tropical Ecology (IRET), Natl. Center of Scientific Res. and Technol., Gabon; GG01 <- K. Ushida, Kyoto Univ., Japan |
| 67770 | A. Ngomanda GG01. |
doi: 10.13145/bacdive23789.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium moukalabense
- full scientific name: Bifidobacterium moukalabense Tsuchida et al. 2014
@ref: 20460
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium moukalabense
full scientific name: Bifidobacterium moukalabense Tsuchida et al. 2014
strain designation: GG01
type strain: yes
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 92
Culture and growth conditions
culture medium
- @ref: 20460
- name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
- growth: yes
- link: https://mediadive.dsmz.de/medium/58
- composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 20460 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 20460
- oxygen tolerance: obligate anaerobe
spore formation
- @ref: 125439
- spore formation: no
- confidence: 96
metabolite utilization
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 68371 | Potassium 5-ketogluconate | - | builds acid from | |
| 68371 | N-acetylglucosamine | - | builds acid from | 59640 |
| 68371 | D-galactose | + | builds acid from | 12936 |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | |
| 68371 | gluconate | - | builds acid from | 24265 |
| 68371 | L-arabitol | - | builds acid from | 18403 |
| 68371 | D-arabitol | - | builds acid from | 18333 |
| 68371 | L-fucose | - | builds acid from | 18287 |
| 68371 | D-fucose | - | builds acid from | 28847 |
| 68371 | D-tagatose | - | builds acid from | 16443 |
| 68371 | D-lyxose | - | builds acid from | 62318 |
| 68371 | turanose | + | builds acid from | 32528 |
| 68371 | gentiobiose | + | builds acid from | 28066 |
| 68371 | xylitol | - | builds acid from | 17151 |
| 68371 | glycogen | + | builds acid from | 28087 |
| 68371 | starch | + | builds acid from | 28017 |
| 68371 | raffinose | + | builds acid from | 16634 |
| 68371 | melezitose | + | builds acid from | 6731 |
| 68371 | inulin | - | builds acid from | 15443 |
| 68371 | trehalose | + | builds acid from | 27082 |
| 68371 | sucrose | + | builds acid from | 17992 |
| 68371 | melibiose | + | builds acid from | 28053 |
| 68371 | lactose | + | builds acid from | 17716 |
| 68371 | maltose | + | builds acid from | 17306 |
| 68371 | cellobiose | + | builds acid from | 17057 |
| 68371 | salicin | + | builds acid from | 17814 |
| 68371 | esculin | + | builds acid from | 4853 |
| 68371 | arbutin | + | builds acid from | 18305 |
| 68371 | amygdalin | + | builds acid from | 27613 |
| 68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
| 68371 | D-sorbitol | - | builds acid from | 17924 |
| 68371 | D-mannitol | + | builds acid from | 16899 |
| 68371 | myo-inositol | - | builds acid from | 17268 |
| 68371 | galactitol | - | builds acid from | 16813 |
| 68371 | L-rhamnose | - | builds acid from | 62345 |
| 68371 | L-sorbose | - | builds acid from | 17266 |
| 68371 | D-mannose | + | builds acid from | 16024 |
| 68371 | D-fructose | + | builds acid from | 15824 |
| 68371 | D-glucose | + | builds acid from | 17634 |
| 68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
| 68371 | ribitol | - | builds acid from | 15963 |
| 68371 | L-xylose | - | builds acid from | 65328 |
| 68371 | D-xylose | + | builds acid from | 65327 |
| 68371 | D-ribose | + | builds acid from | 16988 |
| 68371 | L-arabinose | + | builds acid from | 30849 |
| 68371 | D-arabinose | - | builds acid from | 17108 |
| 68371 | erythritol | - | builds acid from | 17113 |
| 68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20460 | - | - | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | - | + | - | - | + | - | + | + | + | + | + | + | + | + | + | + | - | + | + | + | + | - | + | + | - | - | - | - | - | - | - | - | - |
| 20460 | - | - | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | - | + | - | - | +/- | - | + | + | + | + | + | + | + | + | + | + | - | + | + | + | + | - | + | + | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 20460 | feces of wild western lowland gorilla (Gorilla gorilla gorilla) | Gorilla gorilla gorilla | Moukalaba-Daudou National Park | Gabon | GAB | Africa |
| 67770 | Feces of a wild lowland gorilla in Moukalaba-Daudou National Park | Gabon | GAB | Africa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Primates |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 20460
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20460 | Bifidobacterium moukalabense gene for 16S ribosomal RNA, partial sequence, strain: JCM 18751 | AB821293 | 1495 | nuccore | 1435051 |
| 67770 | Bifidobacterium moukalabense JCM 18751 gene for 16S rRNA, partial sequence | LC521993 | 1470 | nuccore | 1435051 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008979 | 447 | nuccore | 1685 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008980 | 432 | nuccore | 1683 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008981 | 444 | nuccore | 33905 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008982 | 558 | nuccore | 35760 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008983 | 437 | nuccore | 78345 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008984 | 412 | nuccore | 1693 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008985 | 478 | nuccore | 367928 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008986 | 403 | nuccore | 1437611 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008987 | 404 | nuccore | 78448 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008988 | 404 | nuccore | 78344 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008989 | 487 | nuccore | 78346 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008990 | 441 | nuccore | 212365 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008991 | 512 | nuccore | 31954 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008992 | 417 | nuccore | 1687 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008993 | 473 | nuccore | 158787 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008994 | 417 | nuccore | 1437606 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008995 | 452 | nuccore | 77635 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008996 | 431 | nuccore | 471511 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008997 | 477 | nuccore | 356829 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008998 | 409 | nuccore | 518643 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM008999 | 443 | nuccore | 1437610 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009000 | 449 | nuccore | 1437609 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009001 | 438 | nuccore | 1437607 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009002 | 481 | nuccore | 762211 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009003 | 416 | nuccore | 1437608 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009004 | 351 | nuccore | 1692 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009005 | 416 | nuccore | 1341694 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009006 | 519 | nuccore | 1690 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009007 | 430 | nuccore | 1437605 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009008 | 475 | nuccore | 302912 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009009 | 452 | nuccore | 1150423 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009010 | 459 | nuccore | 555970 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009011 | 589 | nuccore | 1688 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009012 | 460 | nuccore | 566552 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009013 | 471 | nuccore | 561180 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009014 | 459 | nuccore | 547043 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009015 | 386 | nuccore | 218140 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009016 | 435 | nuccore | 78343 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009017 | 443 | nuccore | 391904 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009018 | 442 | nuccore | 1679 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009019 | 462 | nuccore | 1681 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009020 | 439 | nuccore | 79262 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009021 | 467 | nuccore | 1150460 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009022 | 459 | nuccore | 1437612 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009023 | 387 | nuccore | 327277 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009024 | 411 | nuccore | 1684 |
| 124043 | Bifidobacterium moukalabense DSM 27321 16S-23S ribosomal RNA gene, partial sequence. | KM009025 | 463 | nuccore | 1435051 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium moukalabense GG01T | GCA_005405645 | contig | ncbi | 1333651 |
| 66792 | Bifidobacterium moukalabense DSM 27321 | 1435051.3 | wgs | patric | 1435051 |
| 66792 | Bifidobacterium moukalabense DSM 27321 | 2609460007 | draft | img | 1435051 |
| 67770 | Bifidobacterium moukalabense DSM 27321 | GCA_000522505 | contig | ncbi | 1435051 |
GC content
- @ref: 20460
- GC-content: 60.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.402 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 82.256 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.133 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 91.649 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.467 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 92 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 64.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 88.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 60.8 |
External links
@ref: 20460
culture collection no.: DSM 27321, JCM 18751
straininfo link
- @ref: 87820
- straininfo: 406737
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24158945 | Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla). | Tsuchida S, Takahashi S, Nguema PPM, Fujita S, Kitahara M, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida K | Int J Syst Evol Microbiol | 10.1099/ijs.0.055186-0 | 2013 | Animals, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, Chaperonin 60/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Gabon, Genes, Bacterial, Gorilla gorilla/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Genetics | 24558236 | The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon. | Lugli GA, Duranti S, Milani C, Turroni F, Viappiani A, Mangifesta M, van Sinderen D, Ventura M | Genome Announc | 10.1128/genomeA.00048-14 | 2014 | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20460 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27321 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27321) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 68371 | Automatically annotated from API 50CH acid | |||
| 87820 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406737.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |