Strain identifier
BacDive ID: 23786
Type strain: 
Species: Bartonella senegalensis
Strain Designation: OS02
Strain history: <- O. Mediannikov, URMITE, UMR IRD 198/CNRS6236, Univ. Méditerranée, Marseille, France; OS02
NCBI tax ID(s): 1468418 (species)
version 8.1 (current version)
General
@ref: 20456
BacDive-ID: 23786
DSM-Number: 23168
keywords: genome sequence, 16S sequence, Bacteria
description: Bartonella senegalensis OS02 is a bacterium that was isolated from soft tick Ornithodoros sonrai collected in a rodent burrow.
NCBI tax id
- NCBI tax id: 1468418
- Matching level: species
strain history
- @ref: 20456
- history: <- O. Mediannikov, URMITE, UMR IRD 198/CNRS6236, Univ. Méditerranée, Marseille, France; OS02
doi: 10.13145/bacdive23786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Bartonellaceae
- genus: Bartonella
- species: Bartonella senegalensis
- full scientific name: Bartonella senegalensis Mediannikov et al. 2014
@ref: 20456
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Bartonellaceae
genus: Bartonella
species: Bartonella senegalensis
full scientific name: Bartonella senegalensis Mediannikov et al. 2014
strain designation: OS02
type strain: yes
Morphology
colony morphology
- @ref: 20456
- type of hemolysis: gamma
Physiology and metabolism
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 20456 | cytochrome-c oxidase | - | 1.9.3.1 |
| 68377 | beta-galactosidase | - | 3.2.1.23 |
| 68377 | alkaline phosphatase | - | 3.1.3.1 |
| 68377 | lipase | - |
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20456 | + | +/- | + | + | - | - | - | - | - | - | + | - | - |
| 20456 | - | - | - | - | - | + | - | - | - | - | + | - | + |
| 20456 | + | - | - | - | - | - | + | - | - | - | - | + | - |
| 20456 | - | + | +/- | + | + | - | - | - | - | - | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 20456
- sample type: soft tick Ornithodoros sonrai collected in a rodent burrow
- host species: Ornithodoros sonrai
- geographic location: Soulkhou Thissé village (13° 48' N 14° 56' W)
- country: Senegal
- origin.country: SEN
- continent: Africa
- latitude: 13.8
- longitude: -14.9333
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | |
| #Host | #Arthropoda | #Tick |
| #Host | #Mammals | #Rodentia (Other) |
taxonmaps
- @ref: 69479
- File name: preview.99_1245.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_1245&stattab=map
- Last taxonomy: Bartonella
- 16S sequence: HM636442
- Sequence Identity:
- Total samples: 172
- soil counts: 29
- aquatic counts: 22
- animal counts: 118
- plant counts: 3
Sequence information
16S sequences
- @ref: 20456
- description: Bartonella senegalensis OS02 16S ribosomal RNA gene, partial sequence
- accession: HM636442
- length: 1410
- database: ena
- NCBI tax ID: 929794
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bartonella senegalensis OS02 | GCA_000312545 | scaffold | ncbi | 929794 |
| 66792 | Bartonella senegalensis OS02 | 2547132167 | draft | img | 929794 |
GC content
- @ref: 20456
- GC-content: 38.6
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.908 | no |
| flagellated | no | 98.035 | no |
| gram-positive | no | 98.014 | no |
| anaerobic | no | 97.034 | no |
| aerobic | no | 94.587 | no |
| halophile | no | 58.853 | no |
| spore-forming | no | 97.667 | no |
| glucose-util | yes | 51.877 | no |
| thermophile | no | 93.008 | no |
| glucose-ferment | no | 75.863 | no |
External links
@ref: 20456
culture collection no.: DSM 23168, CSUR B623
straininfo link
- @ref: 87818
- straininfo: 400104
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20456 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23168 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23168) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68377 | Automatically annotated from API NH | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 87818 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400104.1 |