General

@ref: 20963

BacDive-ID: 23744

DSM-Number: 23372

keywords: 16S sequence, Bacteria, mesophilic

description: Gracilibacillus marinus HB09003 is a mesophilic bacterium that was isolated from seawater sample.

NCBI tax id

• NCBI tax id: 630535
• Matching level: species

strain history

• @ref: 20963
• history: <- C. Xiao, Chinese Academy Tropical Agricultural Sci., Haikou, China; CGMCC 1.10343 <- J. Ye

doi: 10.13145/bacdive23744.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Bacilli
• order: Caryophanales
• family: Bacillaceae
• genus: Gracilibacillus
• species: Gracilibacillus marinus
• full scientific name: Gracilibacillus marinus Huang et al. 2013

@ref: 20963

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Gracilibacillus

species: Gracilibacillus marinus

full scientific name: Gracilibacillus marinus Huang et al. 2013

strain designation: HB09003

type strain: yes

Culture and growth conditions

culture medium

• @ref: 20963
• name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514
• composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 20963
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 20963
• sample type: seawater sample
• geographic location: Hainan, Northern South China Sea
• country: China
• origin.country: CHN
• continent: Asia

isolation source categories

• Cat1: #Environmental
• Cat2: #Aquatic
• Cat3: #Marine

taxonmaps

• @ref: 69479
• File name: preview.99_12959.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2444;97_7991;98_9803;99_12959&stattab=map
• Last taxonomy: Gracilibacillus marinus
• 16S sequence: FJ809748
• Sequence Identity:
• Total samples: 92
• soil counts: 26
• aquatic counts: 27
• animal counts: 30
• plant counts: 9

Sequence information

16S sequences

• @ref: 20963
• description: Gracilibacillus sp. HB09003 16S ribosomal RNA gene, partial sequence
• accession: FJ809748
• length: 1466
• database: ena
• NCBI tax ID: 630535

GC content

• @ref: 20963
• GC-content: 34.1

External links

@ref: 20963

culture collection no.: DSM 23372, CGMCC 1.10343

literature

• topic: Phylogeny
• Pubmed-ID: 23942614
• title: Gracilibacillus marinus sp. nov., isolated from the northern South China Sea.
• authors: Huang HQ, Wang Y, Yuan WD, Xiao C, Ye JJ, Liu M, Zhu J, Sun QG, Bao SX
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-013-9977-2
• year: 2013
• mesh: Bacillaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism
• topic2: Genetics

Reference