Strain identifier

BacDive ID: 23520

Type strain: No

Species: Schaalia turicensis

Strain Designation: V2901

Strain history: <- A.E. Zautner, Inst. Med. Mikrobiol. Univ. Göttingen; V2901

NCBI tax ID(s): 131111 (species)

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General

@ref: 20244

BacDive-ID: 23520

DSM-Number: 26658

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Schaalia turicensis V2901 is an anaerobe, mesophilic bacterium that was isolated from 23 years old male with congenital femur hypoplasia.

NCBI tax id

  • NCBI tax id: 131111
  • Matching level: species

strain history

  • @ref: 20244
  • history: <- A.E. Zautner, Inst. Med. Mikrobiol. Univ. Göttingen; V2901

doi: 10.13145/bacdive23520.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Schaalia
  • species: Schaalia turicensis
  • full scientific name: Schaalia turicensis (Wüst et al. 1995) Nouioui et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces turicensis

@ref: 20244

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Schaalia

species: Schaalia turicensis

full scientific name: Schaalia turicensis (Wüst et al. 1995) Nouioui et al. 2018

strain designation: V2901

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.6
69480100positive

Culture and growth conditions

culture medium

  • @ref: 20244
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 20244
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
20244anaerobe
69480anaerobe94.722

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
20244-----+/------------+++++-++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 20244
  • sample type: 23 years old male with congenital femur hypoplasia
  • geographic location: Rostock
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Human
  • Cat3: #Male

Safety information

risk assessment

  • @ref: 20244
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20244
  • description: Actinomyces turicensis isolate V2901 16S ribosomal RNA gene, partial sequence
  • accession: EU130903
  • length: 684
  • database: ena
  • NCBI tax ID: 131111

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Schaalia turicensis strain DSM 26658131111.10wgspatric131111
66792Schaalia turicensis DSM 266582844634069draftimg131111

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.453no
gram-positiveyes95.329no
anaerobicyes84.565yes
halophileno83.748no
spore-formingno95.112no
glucose-utilyes84.81no
aerobicno95.249yes
flagellatedno97.203no
thermophileno93.077yes
glucose-fermentyes73.257no

External links

@ref: 20244

culture collection no.: DSM 26658

straininfo link

  • @ref: 87626
  • straininfo: 396929

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20244Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26658Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26658)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
87626Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396929.1