Strain identifier
BacDive ID: 23329
Type strain: 
Species: Thermoanaerobacter thermohydrosulfuricus
Strain Designation: WC1
Strain history: <- R. Sparling, Dept. Microbiol., Univ. Manitoba, Winnipeg, Canada; WC1 <- T. J. Verbeke {2008}
NCBI tax ID(s): 1516 (species)
version 9.1 (current version)
General
@ref: 18935
BacDive-ID: 23329
DSM-Number: 26960
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming
description: Thermoanaerobacter thermohydrosulfuricus WC1 is an anaerobe, spore-forming bacterium that was isolated from decaying woodchip compost.
NCBI tax id
- NCBI tax id: 1516
- Matching level: species
strain history
- @ref: 18935
- history: <- R. Sparling, Dept. Microbiol., Univ. Manitoba, Winnipeg, Canada; WC1 <- T. J. Verbeke {2008}
doi: 10.13145/bacdive23329.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Thermoanaerobacterales
- family: Thermoanaerobacteraceae
- genus: Thermoanaerobacter
- species: Thermoanaerobacter thermohydrosulfuricus
- full scientific name: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993
synonyms
- @ref: 20215
- synonym: Clostridium thermohydrosulfuricum
@ref: 18935
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Thermoanaerobacterales
family: Thermoanaerobacteraceae
genus: Thermoanaerobacter
species: Thermoanaerobacter thermohydrosulfuricus
full scientific name: Thermoanaerobacter thermohydrosulfuricus (Klaushofer and Parkkinen 1965) Lee et al. 1993
strain designation: WC1
type strain: no
Culture and growth conditions
culture medium
- @ref: 18935
- name: THERMOANAEROBACTER MEDIUM (DSMZ Medium 61)
- growth: yes
- link: https://mediadive.dsmz.de/medium/61
- composition: Name: THERMOANAEROBACTER MEDIUM (DSMZ Medium 61) Composition: Sucrose 10.0 g/l Tryptone 10.0 g/l Yeast extract 2.0 g/l Na2SO3 0.2 g/l FeSO4 x 7 H2O 0.2 g/l Na2S2O3 x 5 H2O 0.08 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 18935
- growth: positive
- type: growth
- temperature: 60
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 18935 | anaerobe | |
| 69480 | anaerobe | 96.346 |
Isolation, sampling and environmental information
isolation
- @ref: 18935
- sample type: decaying woodchip compost
- geographic location: Quebec, Arundel
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Composting |
| #Host | #Plants | #Decomposing plant |
| #Host Body Product | #Plant | #Timber |
taxonmaps
- @ref: 69479
- File name: preview.99_2099.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_101;96_271;97_1354;98_1642;99_2099&stattab=map
- Last taxonomy: Thermoanaerobacter
- 16S sequence: HM585213
- Sequence Identity:
- Total samples: 1391
- soil counts: 30
- aquatic counts: 113
- animal counts: 1192
- plant counts: 56
Safety information
risk assessment
- @ref: 18935
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18935
- description: Thermoanaerobacter thermohydrosulfuricus strain WC1 16S ribosomal RNA gene, partial sequence
- accession: HM585213
- length: 1658
- database: nuccore
- NCBI tax ID: 1198630
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermoanaerobacter thermohydrosulfuricus WC1 | GCA_000353265 | scaffold | ncbi | 1198630 |
| 66792 | Thermoanaerobacter thermohydrosulfuricus WC1 | 1198630.3 | wgs | patric | 1198630 |
| 66792 | Thermoanaerobacter thermohydrosulfuricus WC1 | 2517572224 | draft | img | 1198630 |
GC content
- @ref: 18935
- GC-content: 34.35
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 52.348 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 96.346 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.514 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 79.228 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | yes | 76.737 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 73.833 | no |
External links
@ref: 18935
culture collection no.: DSM 26960
straininfo link
- @ref: 87546
- straininfo: 404254
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18935 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26960) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26960 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87546 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404254.1 | StrainInfo: A central database for resolving microbial strain identifiers |