Strain identifier
BacDive ID: 23268
Type strain: 
Species: Novosphingobium aquaticum
Strain Designation: FNE08-86
Strain history: <- S. P. Glaeser, Justus-Liebig-Universität, Giessen, Germany; FNE08-86
NCBI tax ID(s): 1117703 (species)
version 8.1 (current version)
General
@ref: 19372
BacDive-ID: 23268
DSM-Number: 25088
keywords: 16S sequence, Bacteria, spore-forming, mesophilic, Gram-negative, rod-shaped
description: Novosphingobium aquaticum FNE08-86 is a spore-forming, mesophilic, Gram-negative bacterium that was isolated from subsurface water of a humic matter-rich and almost-neutral bog lake.
NCBI tax id
- NCBI tax id: 1117703
- Matching level: species
strain history
- @ref: 19372
- history: <- S. P. Glaeser, Justus-Liebig-Universität, Giessen, Germany; FNE08-86
doi: 10.13145/bacdive23268.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Novosphingobium
- species: Novosphingobium aquaticum
- full scientific name: Novosphingobium aquaticum Glaeser et al. 2013
@ref: 19372
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Novosphingobium
species: Novosphingobium aquaticum
full scientific name: Novosphingobium aquaticum Glaeser et al. 2013
strain designation: FNE08-86
type strain: yes
Morphology
cell morphology
- @ref: 30951
- gram stain: negative
- cell length: 2 µm
- cell width: 0.9 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30951
- production: yes
Culture and growth conditions
culture medium
- @ref: 19372
- name: K7 MEDIUM (DSMZ Medium 1199)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1199
- composition: Name: K7 MEDIUM (DSMZ Medium 1199) Composition: Peptone 1.0 g/l Yeast extract 1.0 g/l Glucose 1.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19372 | positive | growth | 28 | mesophilic |
| 30951 | positive | growth | 04-32 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30951 | positive | growth | 4.0-8.0 | acidophile |
| 30951 | positive | optimum | 5.25 |
Physiology and metabolism
spore formation
- @ref: 30951
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30951 | NaCl | positive | growth | 0-0.75 % |
| 30951 | NaCl | positive | optimum | 0.25 % |
observation
- @ref: 30951
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30951 | 22599 | arabinose | + | carbon source |
| 30951 | 17057 | cellobiose | + | carbon source |
| 30951 | 28757 | fructose | + | carbon source |
| 30951 | 28260 | galactose | + | carbon source |
| 30951 | 17234 | glucose | + | carbon source |
| 30951 | 17306 | maltose | + | carbon source |
| 30951 | 37684 | mannose | + | carbon source |
| 30951 | 26271 | proline | + | carbon source |
| 30951 | 17992 | sucrose | + | carbon source |
| 30951 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30951 | catalase | + | 1.11.1.6 |
| 30951 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 19372
- sample type: subsurface water of a humic matter-rich and almost-neutral bog lake
- geographic location: Brandenburg, Lake Große Fuchskuhle, north-east basin (53° 10' N 13° 02' E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 53.1667
- longitude: 13.0333
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Wetland (Swamp) |
Safety information
risk assessment
- @ref: 19372
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19372
- description: Novosphingobium aquaticum Glaeser et al. 2013 strain FNE08-86 16S ribosomal RNA gene, partial sequence
- accession: JN399173
- length: 1354
- database: ena
- NCBI tax ID: 1117703
External links
@ref: 19372
culture collection no.: DSM 25088, CCM 7983
straininfo link
- @ref: 87490
- straininfo: 408214
literature
- topic: Phylogeny
- Pubmed-ID: 23264506
- title: Novosphingobium aquaticum sp. nov., isolated from the humic-matter-rich bog lake Grosse Fuchskuhle.
- authors: Glaeser SP, Bolte K, Busse HJ, Kampfer P, Grossart HP, Glaeser J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048280-0
- year: 2012
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Germany, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/analysis, *Water Microbiology, *Wetlands
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19372 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25088) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25088 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30951 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27281 | 28776041 | |
| 87490 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408214.1 | StrainInfo: A central database for resolving microbial strain identifiers |