Strain identifier
BacDive ID: 23179
Type strain: 
Species: Paenibacillus algorifonticola
Strain Designation: XJ259
Strain history: L. Zhang XJ259.
NCBI tax ID(s): 684063 (species)
version 8.1 (current version)
General
@ref: 19122
BacDive-ID: 23179
DSM-Number: 26746
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus algorifonticola XJ259 is a spore-forming, mesophilic, motile bacterium that was isolated from cold spring.
NCBI tax id
- NCBI tax id: 684063
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19122 | <- JCM <- L. Zhang; XJ259 |
| 67770 | L. Zhang XJ259. |
doi: 10.13145/bacdive23179.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus algorifonticola
- full scientific name: Paenibacillus algorifonticola Tang et al. 2011
@ref: 19122
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus algorifonticola
full scientific name: Paenibacillus algorifonticola Tang et al. 2011
strain designation: XJ259
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.661 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 19122
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19122 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19122 | cold spring | Xinjiang Uyghur Autonomous Region | China | CHN | Asia |
| 67770 | Cold spring from Xinjiang Uyghur Autonomous Region | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Psychrophilic (<10°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_27189.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_13487;97_16421;98_20372;99_27189&stattab=map
- Last taxonomy: Paenibacillus algorifonticola
- 16S sequence: GQ383922
- Sequence Identity:
- Total samples: 1932
- soil counts: 1155
- aquatic counts: 142
- animal counts: 64
- plant counts: 571
Safety information
risk assessment
- @ref: 19122
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19122
- description: Paenibacillus algorifonticola strain XJ259 16S ribosomal RNA gene, partial sequence
- accession: GQ383922
- length: 1519
- database: ena
- NCBI tax ID: 684063
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus algorifonticola strain CGMCC 1.10223 | 684063.4 | wgs | patric | 684063 |
| 66792 | Paenibacillus algorifonticola CGMCC 1.10223 | 2617270911 | draft | img | 684063 |
| 66792 | Paenibacillus algorifonticola XJ259 | 2630968633 | draft | img | 684063 |
| 67770 | Paenibacillus algorifonticola CGMCC 1.10223 | GCA_900112925 | scaffold | ncbi | 684063 |
| 67770 | Paenibacillus algorifonticola XJ259 | GCA_000971975 | scaffold | ncbi | 684063 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 19122 | 47.0 | thermal denaturation, midpoint method (Tm) |
| 67770 | 47 | thermal denaturation, midpoint method (Tm) |
| 67770 | 48.39 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 86.561 | no |
| anaerobic | no | 99.17 | no |
| halophile | no | 92.481 | no |
| spore-forming | yes | 94.385 | no |
| glucose-util | yes | 91.257 | no |
| thermophile | no | 99.824 | yes |
| flagellated | yes | 82.463 | no |
| aerobic | yes | 91.004 | no |
| glucose-ferment | no | 84.597 | no |
| motile | yes | 87.2 | no |
External links
@ref: 19122
culture collection no.: DSM 26746, CGMCC 1.10223, JCM 16598
straininfo link
- @ref: 87412
- straininfo: 405855
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20889764 | Paenibacillus algorifonticola sp. nov., isolated from a cold spring. | Tang QY, Yang N, Wang J, Xie YQ, Ren B, Zhou YG, Gu MY, Mao J, Li WJ, Shi YH, Zhang LX | Int J Syst Evol Microbiol | 10.1099/ijs.0.025346-0 | 2010 | Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology, Temperature | Genetics |
| Phylogeny | 26612690 | Paenibacillus radicis sp. nov., an endophytic bacterium isolated from maize root. | Gao JL, Yuan M, Wang XM, Qiu TL, Lv FY, Yang MM, Sun JG | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000795 | 2015 | ||
| Phylogeny | 27189475 | Paenibacillusliaoningensis sp. nov., isolated from soil. | Ai HX, Che YC, Wang L, Zhang L, Gu Y, Tan YN, Chang AK, Liu HS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001159 | 2016 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19122 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26746) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26746 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87412 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405855.1 | StrainInfo: A central database for resolving microbial strain identifiers |