Name: Paenibacillus algorifonticola XJ259
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23179

Type strain:

Species: Paenibacillus algorifonticola

Strain Designation: XJ259

Culture col. no.: DSM 26746, CGMCC 1.10223, JCM 16598

Strain history: L. Zhang XJ259.

NCBI tax ID(s): 684063 (species)

SI-ID 405855

DSM 26746

Section

Paenibacillus algorifonticola XJ259 is a spore-forming, mesophilic, motile bacterium that was isolated from cold spring.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus algorifonticola**
	Full Scientific Name (LPSN)	Paenibacillus algorifonticola Tang et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.661

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19122]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #19122]

Culture medium growth

[Ref.: #19122]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19122]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19122]			growth	25 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #19122]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19122]	Sample type/isolated from	cold spring
[Ref.: #19122]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region
[Ref.: #19122]	Country	China
[Ref.: #19122]	Country ISO 3 Code	CHN
[Ref.: #19122]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Cold spring from Xinjiang Uyghur Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Spring
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ383922 (>99% sequence identity) for Paenibacillus algorifonticola from Microbeatlas

Aquatic Samples	142
Soil Samples	1155
Animal Samples	64
Plant Samples	571
Total Samples	1932

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19122]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19122]	Paenibacillus algorifonticola strain XJ259 16S ribosomal RNA gene, partial sequence	GQ383922	1519	ENA	684063 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus algorifonticola CGMCC 1.10223	GCA_900112925	scaffold	GenBank	684063 tax ID
[Ref.: #67770]	Paenibacillus algorifonticola XJ259	GCA_000971975	scaffold	GenBank	684063 tax ID
[Ref.: #66792]	Paenibacillus algorifonticola strain CGMCC 1.10223	684063.4	wgs	PATRIC	684063 tax ID	*
[Ref.: #66792]	Paenibacillus algorifonticola CGMCC 1.10223	2617270911	draft	JGI IMG/M	684063 tax ID	*
[Ref.: #66792]	Paenibacillus algorifonticola XJ259	2630968633	draft	JGI IMG/M	684063 tax ID	*

[Ref.: #19122]	GC-content	47.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	47 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	48.39 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus algorifonticola CGMCC 1.10223 NCBI: GCA_900112925.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus algorifonticola strain CGMCC 1.10223 PATRIC: 684063.4
[Ref.: #69480]	gram-positive	yes	86.561	no
[Ref.: #69480]	anaerobic	no	99.17	no
[Ref.: #69480]	halophile	no	92.481	no
[Ref.: #69480]	spore-forming	yes	94.385	no
[Ref.: #69480]	glucose-util	yes	91.257	no
[Ref.: #69480]	thermophile	no	99.824	yes
[Ref.: #69480]	flagellated	yes	82.463	no
[Ref.: #69480]	aerobic	yes	91.004	no
[Ref.: #69480]	glucose-ferment	no	84.597	no
[Ref.: #69480]	motile	yes	87.2	no

Availability in culture collections External links

[Ref.: #19122]

Culture collection no.

DSM 26746, CGMCC 1.10223, JCM 16598

[Ref.: #87412]

SI-ID 405855

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillusliaoningensis sp. nov., isolated from soil.	Ai HX, Che YC, Wang L, Zhang L, Gu Y, Tan YN, Chang AK, Liu HS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001159	2016	*
Phylogeny	Paenibacillus radicis sp. nov., an endophytic bacterium isolated from maize root.	Gao JL, Yuan M, Wang XM, Qiu TL, Lv FY, Yang MM, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.000795	2015	*
Phylogeny	Paenibacillus algorifonticola sp. nov., isolated from a cold spring.	Tang QY, Yang N, Wang J, Xie YQ, Ren B, Zhou YG, Gu MY, Mao J, Li WJ, Shi YH, Zhang LX	Int J Syst Evol Microbiol	10.1099/ijs.0.025346-0	2010	*

References

#19122

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26746

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87412

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405855.1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus algorifonticola CGMCC 1.10223

Paenibacillus algorifonticola strain CGMCC 1.10223

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