Strain identifier

BacDive ID: 23167

Type strain: Yes

Species: Streptomonospora sediminis

Strain history: CCTCC AB 2012051 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M11335.

NCBI tax ID(s): 1323732 (species)

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General

@ref: 18927

BacDive-ID: 23167

DSM-Number: 45723

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped

description: Streptomonospora sediminis DSM 45723 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1323732
  • Matching level: species

strain history

@refhistory
18927<- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM M11335 <- J. He
67770CCTCC AB 2012051 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM M11335.

doi: 10.13145/bacdive23167.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Streptomonospora
  • species: Streptomonospora sediminis
  • full scientific name: Streptomonospora sediminis Zhang et al. 2013

@ref: 18927

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Streptomonospora

species: Streptomonospora sediminis

full scientific name: Streptomonospora sediminis Zhang et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 31121
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31121
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31121positivegrowth15-45
31121positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
31121positivegrowth6.0-9.0alkaliphile
31121positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31121
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31121
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31121NaClpositivegrowth0-20 %
31121NaClpositiveoptimum3.5 %

observation

@refobservation
31121aggregates in chains
67770quinones: MK-11(H6), MK-10(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3112116449alanine+carbon source
3112129016arginine+carbon source
3112135391aspartate+carbon source
3112129987glutamate+carbon source
3112128044phenylalanine+carbon source
3112126986threonine+carbon source
3112116296D-tryptophan+carbon source
3112117632nitrate+reduction

enzymes

  • @ref: 31121
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
18927marine sedimentIndian Ocean, Little Andaman, Naval area (92° 34.150' E 10° 34.783' N)IndiaINDAsia10.579792.5692
67770Marine sediment in Naval areaLittle AndamanIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_183402.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_2754;97_13042;98_16047;99_183402&stattab=map
  • Last taxonomy: Streptomonospora sediminis subclade
  • 16S sequence: KC768773
  • Sequence Identity:
  • Total samples: 8
  • soil counts: 1
  • animal counts: 7

Safety information

risk assessment

  • @ref: 18927
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18927
  • description: Streptomonospora sediminis strain YIM M11335 16S ribosomal RNA gene, partial sequence
  • accession: KC768773
  • length: 1540
  • database: ena
  • NCBI tax ID: 1323732

GC content

@refGC-contentmethod
1892770.7high performance liquid chromatography (HPLC)
3112170.7

External links

@ref: 18927

culture collection no.: DSM 45723, CCTCC AB 2012051, YIM M11335, JCM 31080

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23847283Description of Streptomonospora sediminis sp. nov. and Streptomonospora nanhaiensis sp. nov., and reclassification of Nocardiopsis arabia Hozzein & Goodfellow 2008 as Streptomonospora arabica comb. nov. and emended description of the genus Streptomonospora.Zhang DF, Pan HQ, He J, Zhang XM, Zhang YG, Klenk HP, Hu JC, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.052704-02013Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Vitamin K 2/chemistryGenetics
Phylogeny34355285Streptomonospora litoralis sp. nov., a halophilic thiopeptides producer isolated from sand collected at Cuxhaven beach.Khodamoradi S, Hahnke RL, Mast Y, Schumann P, Kampfer P, Steinert M, Ruckert C, Surup F, Rohde M, Wink JAntonie Van Leeuwenhoek10.1007/s10482-021-01609-42021Actinobacteria, DNA, Bacterial/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sand

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18927Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45723)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45723
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31121Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2745028776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta