Strain identifier
BacDive ID: 23159
Type strain: 
Species: Rhodococcus sp.
Strain Designation: BCP1
Strain history: <- S. Fedi; BCP1
NCBI tax ID(s): 1831 (species)
version 8.1 (current version)
General
@ref: 18910
BacDive-ID: 23159
DSM-Number: 44980
keywords: genome sequence, 16S sequence, mesophilic
description: Rhodococcus sp. BCP1 is a mesophilic prokaryote that was isolated from sediment contaminated with chlorinated solvents.
NCBI tax id
- NCBI tax id: 1831
- Matching level: species
strain history
- @ref: 18910
- history: <- S. Fedi; BCP1
doi: 10.13145/bacdive23159.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus sp.
- full scientific name: Rhodococcus Zopf 1891 (Approved Lists 1980)
synonyms
@ref synonym 20215 Prescottella 20215 Rhodococcoides 20215 Spelaeibacter 20215 Prescottia
@ref: 18910
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus sp.
full scientific name: Rhodococcus sp.
strain designation: BCP1
type strain: no
Culture and growth conditions
culture medium
- @ref: 18910
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 18910
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 18910
- sample type: sediment contaminated with chlorinated solvents
- geographic location: Emilia Romagna
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Sediment |
Sequence information
16S sequences
- @ref: 18910
- description: Rhodococcus sp. F 16S ribosomal RNA gene, partial sequence
- accession: DQ001072
- length: 1518
- database: ena
- NCBI tax ID: 325418
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodococcus aetherivorans strain BCP1 | 191292.16 | complete | patric | 191292 |
| 66792 | Rhodococcus aetherivorans strain BCP1 | 191292.23 | plasmid | patric | 191292 |
| 66792 | Rhodococcus aetherivorans strain BCP1 | 191292.24 | plasmid | patric | 191292 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.935 | no |
| gram-positive | yes | 86.706 | no |
| anaerobic | no | 98.826 | no |
| aerobic | yes | 81.743 | no |
| halophile | no | 93.079 | no |
| spore-forming | no | 79.34 | no |
| glucose-util | yes | 91.009 | no |
| flagellated | no | 98.66 | no |
| thermophile | no | 99.273 | yes |
| glucose-ferment | no | 91.774 | no |
External links
@ref: 18910
culture collection no.: DSM 44980
straininfo link
- @ref: 87393
- straininfo: 406759
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18910 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44980) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44980 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87393 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406759.1 | StrainInfo: A central database for resolving microbial strain identifiers |