Strain identifier
BacDive ID: 23159
Type strain: 
Species: Rhodococcus sp.
Strain Designation: BCP1
Strain history: <- S. Fedi; BCP1
NCBI tax ID(s): 194249 (species)
version 9.3 (current version)
General
@ref: 18910
BacDive-ID: 23159
DSM-Number: 44980
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Rhodococcus sp. BCP1 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sediment contaminated with chlorinated solvents.
NCBI tax id
- NCBI tax id: 194249
- Matching level: species
strain history
- @ref: 18910
- history: <- S. Fedi; BCP1
doi: 10.13145/bacdive23159.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Rhodococcus
- species: Rhodococcus sp.
- full scientific name: Rhodococcus Zopf 1891 (Approved Lists 1980)
synonyms
@ref synonym 20215 Rhodococcoides 20215 Prescottella 20215 Prescottia
@ref: 18910
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus sp.
full scientific name: Rhodococcus sp.
strain designation: BCP1
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 93 | |
| 125438 | 90.002 | positive | |
| 125439 | 95 | positive |
Culture and growth conditions
culture medium
- @ref: 18910
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 18910
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 125438 | aerobe | 91.598 |
| 125439 | aerobe | 93.8 |
Isolation, sampling and environmental information
isolation
- @ref: 18910
- sample type: sediment contaminated with chlorinated solvents
- geographic location: Emilia Romagna
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Sediment |
Sequence information
16S sequences
- @ref: 18910
- description: Rhodococcus sp. F 16S ribosomal RNA gene, partial sequence
- accession: DQ001072
- length: 1518
- database: nuccore
- NCBI tax ID: 325418
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodococcus aetherivorans strain BCP1 | 191292.16 | complete | patric | 191292 |
| 66792 | Rhodococcus aetherivorans strain BCP1 | 191292.23 | plasmid | patric | 191292 |
| 66792 | Rhodococcus aetherivorans strain BCP1 | 191292.24 | plasmid | patric | 191292 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.002 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.337 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 54.587 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.9 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.598 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 72.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 68.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 95 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 93.8 |
External links
@ref: 18910
culture collection no.: DSM 44980
straininfo link
- @ref: 87393
- straininfo: 406759
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18910 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44980) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44980 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87393 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406759.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |