Strain identifier
BacDive ID: 23116
Type strain: 
Species: Micromonospora halotolerans
Strain Designation: CR18
Strain history: CECT 7890 <-- M. E. Trujillo, Univ. Salamanca, Spain; CR18.
NCBI tax ID(s): 709879 (species)
version 9 (current version)
General
@ref: 18866
BacDive-ID: 23116
DSM-Number: 45598
keywords: 16S sequence, Bacteria
description: Micromonospora halotolerans CR18 is a bacterium that was isolated from rhizosphere of Pisum sativum.
NCBI tax id
- NCBI tax id: 709879
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18866 | <- M. E. Trujillo, Universidad de Salamanca, Spain; CR 18 <- L. Carro |
| 67770 | CECT 7890 <-- M. E. Trujillo, Univ. Salamanca, Spain; CR18. |
doi: 10.13145/bacdive23116.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora halotolerans
- full scientific name: Micromonospora halotolerans Carro et al. 2013
@ref: 18866
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora halotolerans
full scientific name: Micromonospora halotolerans Carro et al. 2013
strain designation: CR18
type strain: yes
Morphology
multimedia
- @ref: 18866
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45598.jpg
- caption: Medium 554 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18866 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 18866 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf | |
| 18866 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 18866 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 18866 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-10(H4), MK-10(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 18866 | rhizosphere of Pisum sativum | Pisum sativum | Zamora Province, Canizal, (41°49'00''N, 6°13'00''W) | Spain | ESP | Europe | 41.8167 | -6.2167 |
| 67770 | Rhizosphere of a Pisum sativum plant | Pisum sativum | Cañizal | Spain | ESP | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 18866
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18866
- description: Micromonospora halotolerans partial 16S rRNA gene, type strain CR18T
- accession: FN658652
- length: 1450
- database: nuccore
- NCBI tax ID: 709879
GC content
| @ref | GC-content | method |
|---|---|---|
| 18866 | 71.5 | |
| 67770 | 71.5 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 18866
culture collection no.: DSM 45598, CECT 7890, JCM 31701
straininfo link
- @ref: 87352
- straininfo: 390807
literature
- topic: Phylogeny
- Pubmed-ID: 23494330
- title: Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant.
- authors: Carro L, Pukall R, Sproer C, Kroppenstedt RM, Trujillo ME
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-013-9903-7
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, Base Sequence, DNA Gyrase/genetics, DNA, Bacterial/genetics, Micromonospora/*classification/genetics/*isolation & purification, Molecular Sequence Data, Peas/*microbiology, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, *Rhizosphere, Sequence Analysis, DNA, Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18866 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45598) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45598 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 87352 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID390807.1 | StrainInfo: A central database for resolving microbial strain identifiers |