Strain identifier

BacDive ID: 2309

Type strain: Yes

Species: Brevundimonas aurantiaca

Strain Designation: CB-R

Strain history: <- ATCC <- J.S. Poindexter, CB-R <- G. Zavarcin

NCBI tax ID(s): 74316 (species)

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General

@ref: 1737

BacDive-ID: 2309

DSM-Number: 4731

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Brevundimonas aurantiaca CB-R is an aerobe, mesophilic, Gram-negative bacterium that was isolated from contaminated Chlorella culture.

NCBI tax id

  • NCBI tax id: 74316
  • Matching level: species

strain history

  • @ref: 1737
  • history: <- ATCC <- J.S. Poindexter, CB-R <- G. Zavarcin

doi: 10.13145/bacdive2309.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Caulobacteraceae
  • genus: Brevundimonas
  • species: Brevundimonas aurantiaca
  • full scientific name: Brevundimonas aurantiaca (ex Poindexter 1964) Abraham et al. 1999

@ref: 1737

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Caulobacteraceae

genus: Brevundimonas

species: Brevundimonas aurantiaca

full scientific name: Brevundimonas aurantiaca (ex Poindexter 1964) Abraham et al. 1999

strain designation: CB-R

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.993

Culture and growth conditions

culture medium

  • @ref: 1737
  • name: CAULOBACTER MEDIUM (DSMZ Medium 595)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/595
  • composition: Name: CAULOBACTER MEDIUM (DSMZ Medium 595) Composition: Agar 15.0 g/l Bacto peptone 2.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Tap water

culture temp

@refgrowthtypetemperaturerange
1737positivegrowth30mesophilic
56598positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56598
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
56598-+-+-++-++++---++---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
56598-----++++----+-+-+--+

Isolation, sampling and environmental information

isolation

@refsample typehost species
1737contaminated Chlorella cultureChlorella
56598Contaminated Chlorella culture

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Laboratory#Lab enrichment
#Host#Algae#Green algae

taxonmaps

  • @ref: 69479
  • File name: preview.99_2379.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_73;96_180;97_196;98_219;99_2379&stattab=map
  • Last taxonomy: Brevundimonas
  • 16S sequence: AJ227787
  • Sequence Identity:
  • Total samples: 2581
  • soil counts: 220
  • aquatic counts: 640
  • animal counts: 1536
  • plant counts: 185

Safety information

risk assessment

  • @ref: 1737
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Caulobacter henricii strain:ATCC15266 gene for 16S rRNA, partial sequenceAB0168461410ena69395
20218Brevundimonas aurantiaca DNA for 16S ribosomal RNA, strain CB-RAJ2277871416ena74316

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevundimonas aurantiaca DSM 4731GCA_014199955contigncbi74316
66792Brevundimonas aurantiaca strain DSM 473174316.3wgspatric74316
66792Brevundimonas aurantiaca DSM 47312829751152draftimg74316

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.044no
flagellatedno83.074no
gram-positiveno98.357no
anaerobicno98.214no
aerobicyes88.092yes
halophileno95.593no
spore-formingno95.331no
thermophileno99.329yes
glucose-utilyes81.736yes
glucose-fermentno92.831no

External links

@ref: 1737

culture collection no.: DSM 4731, ATCC 15266, CCUG 45020, LMG 18359

straininfo link

  • @ref: 71866
  • straininfo: 11940

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11822672Classification of a Brevundimonas strain detectable after PCR with a Helicobacter-specific primer pair.Buczolits S, Rosengarten R, Hirt R, Busse HJSyst Appl Microbiol10.1078/0723-2020-000522001Base Sequence, DNA Primers, DNA, Ribosomal/chemistry, Helicobacter/*genetics, Molecular Sequence Data, *Polymerase Chain Reaction, Proteobacteria/*classification, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny26674350Brevundimonas albigilva sp. nov., isolated from forest soil.Pham VHT, Jeong S, Chung S, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0008482015
Phylogeny27995874Brevundimonas balnearis sp. nov., isolated from the well water of a thermal bath.Toth E, Szuroczki S, Keki Z, Kosztik J, Makk J, Boka K, Sproer C, Marialigeti K, Schumann PInt J Syst Evol Microbiol10.1099/ijsem.0.0017462017Bacterial Typing Techniques, Base Composition, Caulobacteraceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hungary, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Ubiquinone/analogs & derivatives/chemistry, *Water Microbiology, *Water WellsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1737Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4731)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4731
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
56598Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 45020)https://www.ccug.se/strain?id=45020
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71866Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11940.1StrainInfo: A central database for resolving microbial strain identifiers