Strain identifier

BacDive ID: 23081

Type strain: Yes

Species: Listeria fleischmannii subsp. fleischmannii

Strain Designation: 80937-1, FAM 21873, LU2006-1

Strain history: CIP <- 2012, DSMZ <- D. Bertsch, ETH : strain LU2006-1 <- E. Roth: strain 80937-1

NCBI tax ID(s): 1214117 (strain), 1069827 (species), 1671902 (subspecies)

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General

@ref: 19223

BacDive-ID: 23081

DSM-Number: 24998

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, rod-shaped

description: Listeria fleischmannii subsp. fleischmannii 80937-1 is a mesophilic, Gram-positive, rod-shaped bacterium that was isolated from hard cheese.

NCBI tax id

NCBI tax idMatching level
1069827species
1671902subspecies
1214117strain

strain history

@refhistory
19223<- D. Bertsch, ETH; LU2006-1 <- E. Roth, strain 80937-1
119391CIP <- 2012, DSMZ <- D. Bertsch, ETH : strain LU2006-1 <- E. Roth: strain 80937-1

doi: 10.13145/bacdive23081.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria fleischmannii subsp. fleischmannii
  • full scientific name: Listeria fleischmannii subsp. fleischmannii (Bertsch et al. 2013) den Bakker et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Mesolisteria fleischmannii subsp. fleischmannii

@ref: 19223

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria fleischmannii subsp. fleischmannii

full scientific name: Listeria fleischmannii subsp. fleischmannii (Bertsch et al. 2013) den Bakker et al. 2013

strain designation: 80937-1, FAM 21873, LU2006-1

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438positive90.79
119391positiverod-shapedno

colony morphology

  • @ref: 19223
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39793MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
19223BHI MEDIUM (DSMZ Medium 215)yesName: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/215
19223COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
119391CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperature
19223positivegrowth37
39793positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 96.8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837727897tryptophan-energy source
6837716199urea-hydrolysis
6837718257ornithine-degradation
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717634D-glucose+builds acid from
6837616443D-tagatose-builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616988D-ribose+builds acid from
6837662345L-rhamnose+builds acid from
6837665327D-xylose+builds acid from
6837618333D-arabitol+builds acid from
683764853esculin+hydrolysis
68376320061methyl alpha-D-glucopyranoside+builds acid from

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
19223catalase+1.11.1.6
19223cytochrome-c oxidase-1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68376alpha-mannosidase-3.2.1.24
68376beta-glucosidase+3.2.1.21

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
19223-+-+++++--
19223-+-+++++--

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
19223++++---------
19223-++++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
19223hard cheeseSuisse RomandeSwitzerlandCHEEurope
119391Food, Hard cheeseWesternSwitzerlandCHEEurope2006

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_2810.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_1495;97_1783;98_2179;99_2810&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: JN093101
  • Sequence Identity:
  • Total samples: 788
  • soil counts: 48
  • aquatic counts: 98
  • animal counts: 584
  • plant counts: 58

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
192231Risk group (German classification)
1193911Risk group (French classification)

Sequence information

16S sequences

  • @ref: 19223
  • description: Listeria fleischmannii subsp. fleischmannii strain LU2006-1 16S ribosomal RNA gene, partial sequence
  • accession: JN093101
  • length: 1481
  • database: nuccore
  • NCBI tax ID: 1671902

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Listeria fleischmannii subsp. fleischmannii LU2006-1GCA_000344175contigncbi1214117
66792Listeria fleischmannii LU2006-11214117.4wgspatric1214117
66792Listeria fleischmannii LU2006-12545824676draftimg1214117

GC content

@refGC-contentmethod
1922338.62sequence analysis
1922339.0high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe96.8
125439BacteriaNetgram_stainReaction to gram-stainingvariable83.3
125439BacteriaNetmotilityAbility to perform movementyes70.9
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes81.7
125438gram-positivegram-positivePositive reaction to Gram-stainingyes90.79no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.574no
125438spore-formingspore-formingAbility to form endo- or exosporesno60.508no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no74.059no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno95.233yes
125438motile2+flagellatedAbility to perform flagellated movementno78.227no

External links

@ref: 19223

culture collection no.: DSM 24998, CIP 110547, LMG 26584

straininfo link

  • @ref: 87319
  • straininfo: 377848

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22523164Listeria fleischmannii sp. nov., isolated from cheese.Bertsch D, Rau J, Eugster MR, Haug MC, Lawson PA, Lacroix C, Meile LInt J Syst Evol Microbiol10.1099/ijs.0.036947-02012Bacterial Typing Techniques, Caco-2 Cells, Cheese/*microbiology, DNA, Bacterial/genetics, Drug Resistance, Bacterial, Fatty Acids/analysis, Genes, Bacterial, Humans, Listeria/*classification/genetics/isolation & purification/pathogenicity, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Switzerland, Virulence Factors/geneticsPathogenicity
Phylogeny23524352Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch.den Bakker HC, Manuel CS, Fortes ED, Wiedmann M, Nightingale KKInt J Syst Evol Microbiol10.1099/ijs.0.048587-02013Animals, Bacterial Typing Techniques, Cattle/*microbiology, Colorado, DNA, Bacterial/genetics, Environmental Microbiology, Genome, Bacterial, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, RibotypingGenetics

Reference

@idauthorscataloguedoi/urltitle
19223Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24998)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24998
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39793Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8418
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68376Automatically annotated from API LIST
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87319Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377848.1StrainInfo: A central database for resolving microbial strain identifiers
119391Curators of the CIPCollection of Institut Pasteur (CIP 110547)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110547
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1