Strain identifier

BacDive ID: 23081

Type strain: Yes

Species: Listeria fleischmannii

Strain Designation: 80937-1, FAM 21873, LU2006-1

Strain history: CIP <- 2012, DSMZ <- D. Bertsch, ETH : strain LU2006-1 <- E. Roth: strain 80937-1

NCBI tax ID(s): 1214117 (strain), 1069827 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 19223

BacDive-ID: 23081

DSM-Number: 24998

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive

description: Listeria fleischmannii 80937-1 is a Gram-positive bacterium that was isolated from hard cheese.

NCBI tax id

NCBI tax idMatching level
1214117strain
1069827species

strain history

@refhistory
19223<- D. Bertsch, ETH; LU2006-1 <- E. Roth, strain 80937-1
119391CIP <- 2012, DSMZ <- D. Bertsch, ETH : strain LU2006-1 <- E. Roth: strain 80937-1

doi: 10.13145/bacdive23081.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Listeriaceae
  • genus: Listeria
  • species: Listeria fleischmannii
  • full scientific name: Listeria fleischmannii Bertsch et al. 2013

@ref: 19223

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Listeriaceae

genus: Listeria

species: Listeria fleischmannii subsp. fleischmannii

full scientific name: Listeria fleischmannii subsp. fleischmannii (Bertsch et al. 2013) den Bakker et al. 2013

strain designation: 80937-1, FAM 21873, LU2006-1

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119391positiverod-shapedno
69480positive90.79

colony morphology

  • @ref: 19223
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39793MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
19223BHI MEDIUM (DSMZ Medium 215)yesName: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/215
19223COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
119391CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperature
19223positivegrowth37
39793positivegrowth30

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683764853esculin+hydrolysis
6837618333D-arabitol+builds acid from
6837665327D-xylose+builds acid from
6837662345L-rhamnose+builds acid from
68376320061methyl alpha-D-glucopyranoside+builds acid from
6837616988D-ribose+builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
19223catalase+1.11.1.6
19223cytochrome-c oxidase-1.9.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68376alpha-mannosidase-3.2.1.24
68376beta-glucosidase+3.2.1.21

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
19223-+-+++++--
19223-+-+++++--

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
19223++++---------
19223-++++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
19223hard cheeseSuisse RomandeSwitzerlandCHEEurope
119391Food, Hard cheeseWesternSwitzerlandCHEEurope2006

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_2810.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_32;96_1495;97_1783;98_2179;99_2810&stattab=map
  • Last taxonomy: Listeria
  • 16S sequence: JN093101
  • Sequence Identity:
  • Total samples: 788
  • soil counts: 48
  • aquatic counts: 98
  • animal counts: 584
  • plant counts: 58

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
192231Risk group (German classification)
1193911Risk group (French classification)

Sequence information

16S sequences

  • @ref: 19223
  • description: Listeria fleischmannii subsp. fleischmannii strain LU2006-1 16S ribosomal RNA gene, partial sequence
  • accession: JN093101
  • length: 1481
  • database: nuccore
  • NCBI tax ID: 1671902

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Listeria fleischmannii subsp. fleischmannii LU2006-1GCA_000344175contigncbi1214117
66792Listeria fleischmannii LU2006-11214117.4wgspatric1214117
66792Listeria fleischmannii LU2006-12545824676draftimg1214117

GC content

@refGC-contentmethod
1922338.62sequence analysis
1922339.0high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes90.79no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.574no
69480spore-formingspore-formingAbility to form endo- or exosporesno60.508no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no74.059no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno95.233yes
69480flagellatedmotile2+Ability to perform flagellated movementno78.227no

External links

@ref: 19223

culture collection no.: DSM 24998, CIP 110547, LMG 26584

straininfo link

  • @ref: 87319
  • straininfo: 377848

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22523164Listeria fleischmannii sp. nov., isolated from cheese.Bertsch D, Rau J, Eugster MR, Haug MC, Lawson PA, Lacroix C, Meile LInt J Syst Evol Microbiol10.1099/ijs.0.036947-02012Bacterial Typing Techniques, Caco-2 Cells, Cheese/*microbiology, DNA, Bacterial/genetics, Drug Resistance, Bacterial, Fatty Acids/analysis, Genes, Bacterial, Humans, Listeria/*classification/genetics/isolation & purification/pathogenicity, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Switzerland, Virulence Factors/geneticsPathogenicity
Phylogeny23524352Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch.den Bakker HC, Manuel CS, Fortes ED, Wiedmann M, Nightingale KKInt J Syst Evol Microbiol10.1099/ijs.0.048587-02013Animals, Bacterial Typing Techniques, Cattle/*microbiology, Colorado, DNA, Bacterial/genetics, Environmental Microbiology, Genome, Bacterial, Listeria/*classification/genetics/isolation & purification, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, RibotypingGenetics

Reference

@idauthorscataloguedoi/urltitle
19223Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24998)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24998
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39793Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8418
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68376Automatically annotated from API LIST
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
87319Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377848.1StrainInfo: A central database for resolving microbial strain identifiers
119391Curators of the CIPCollection of Institut Pasteur (CIP 110547)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110547