Listeria fleischmannii subsp. fleischmannii (DSM 24998, CIP 110547, LMG 26584)

Name: Listeria fleischmannii subsp. fleischmannii (DSM 24998, CIP 110547, LMG 26584)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23081

Type strain

Strain Designation 80937-1, FAM 21873, LU2006-1

Culture col. no. DSM 24998 CIP 110547 LMG 26584 80937-1 FAM 21873 1 more

NCBI tax ID(s) 1214117 1069827 1671902

Special Collections DSMZ CIP

Links

Listeria fleischmannii subsp. fleischmannii 80937-1 is a mesophilic, Gram-positive, rod-shaped prokaryote that was isolated from hard cheese.

Gram-positive rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 377848

NCTC 13940,LMG 26584,DSM 24998,CECT 8543,CIP 110547

@ref 20215

Last LPSN update 2025-12-16 09:52:34

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Listeriaceae

Genus Listeria

Species Listeria fleischmannii subsp. fleischmannii

Full scientific name Listeria fleischmannii subsp. fleischmannii (Bertsch et al. 2013) den Bakker et al. 2013

Synonyms (1)

"Mesolisteria fleischmannii subsp. fleischmannii"

BacDive ID	Other strains from **Listeria fleischmannii subsp. fleischmannii** (1)	Type strain
23080	L. fleischmannii subsp. fleischmannii 81384-1, FAM 21875, LU2006-3, DSM 25003

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.79
119391	positive

Colony morphology

@ref	Type of hemolysis	Incubation period
19223	gamma	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Composition
39793	MEDIUM 29- Brain heart agar	Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
19223	BHI MEDIUM (DSMZ Medium 215)	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
19223	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119391	CIP Medium 29

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19223	positive	growth	37	mesophilic
39793	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68376	18333 ChEBI	D-arabitol	+	builds acid from	from API LIST
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68376	16988 ChEBI	D-ribose	+	builds acid from	from API LIST
68376	16443 ChEBI	D-tagatose	-	builds acid from	from API LIST
68376	65327 ChEBI	D-xylose	+	builds acid from	from API LIST
68376	4853 ChEBI	esculin	+	hydrolysis	from API LIST
68376	29042 ChEBI	glucose 1-phosphate	-	builds acid from	from API LIST
68376	62345 ChEBI	L-rhamnose	+	builds acid from	from API LIST
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68376	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API LIST
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68376	alpha-mannosidase	-	3.2.1.24	from API LIST
68377	beta-galactosidase	-	3.2.1.23	from API NH
68376	beta-glucosidase	+	3.2.1.21	from API LIST
19223	catalase	+	1.11.1.6
19223	cytochrome-c oxidase	-	1.9.3.1
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
68377	lipase	-		from API NH
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH

API LIST

@ref	Differentiation L. innocura(+)/ L.monoytogenes(-)DIM	ESC	alpha MAN	DARL	XYL	RHA	Acid from methyl-alpha-D-glucopyranosideMDG	RIB	G1P	TAG	beta hemolysis presentbeta HEM
19223	-	+	-	+	+	+	+	+	-	-	not determinedn.d.
19223	-	+	-	+	+	+	+	+	-	-	not determinedn.d.

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
19223	+	+	+	+	-	-	-	-	-	-	-	-	-
19223	-	+	+	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19223	hard cheese	Suisse Romande	Switzerland	CHE	Europe
119391	Food, Hard cheese	Western	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence JN093101 (>99% sequence identity) for Listeria from Microbeatlas

Aquatic Samples	98
Soil Samples	48
Animal Samples	584
Plant Samples	58
Total Samples	788

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19223	1	Risk group (German classification) According to TRBA 466
119391	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM34417v1 assembly for Listeria fleischmannii subsp. fleischmannii LU2006-1	contig	GCA_000344175	1214117.4	2545824676	1214117	40.33

Genome browser: GCA_000344175

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19223	Listeria fleischmannii subsp. fleischmannii strain LU2006-1 16S ribosomal RNA gene, partial sequence	JN093101	1481		1671902

GC content

@ref	GC-content (mol%)	Method
19223	38.62	sequence analysis
19223	39.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Listeria fleischmannii subsp. fleischmannii LU2006-1
NCBI: GCA_000344175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.80	no
125439	gram_stain	BacteriaNetⓘ	variable	83.30	no
125439	motility	BacteriaNetⓘ	yes	70.90	no
125439	spore_formation	BacteriaNetⓘ	yes	81.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Listeria fleischmannii LU2006-1
PATRIC: 1214117.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.79	no
125438	anaerobic	anaerobicⓘ	no	89.57	no
125438	spore-forming	spore-formingⓘ	no	60.51	no
125438	aerobic	aerobicⓘ	no	74.06	no
125438	thermophilic	thermophileⓘ	no	95.23	yes
125438	flagellated	motile2+ⓘ	no	78.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Identification and Functional Characterization of a Novel Insecticidal Decapeptide from the Myrmicine Ant Manica rubida.	Heep J, Skaljac M, Grotmann J, Kessel T, Seip M, Schmidtberg H, Vilcinskas A.	Toxins (Basel)	10.3390/toxins11100562	2019
Pathogenicity	Defensins from the tick Ixodes scapularis are effective against phytopathogenic fungi and the human bacterial pathogen Listeria grayi.	Tonk M, Cabezas-Cruz A, Valdes JJ, Rego RO, Chrudimska T, Strnad M, Sima R, Bell-Sakyi L, Franta Z, Vilcinskas A, Grubhoffer L, Rahnamaeian M.	Parasit Vectors	10.1186/s13071-014-0554-y	2014
Phylogeny	Listeria fleischmannii sp. nov., isolated from cheese.	Bertsch D, Rau J, Eugster MR, Haug MC, Lawson PA, Lacroix C, Meile L	Int J Syst Evol Microbiol	10.1099/ijs.0.036947-0	2012
Phylogeny	Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch.	den Bakker HC, Manuel CS, Fortes ED, Wiedmann M, Nightingale KK	Int J Syst Evol Microbiol	10.1099/ijs.0.048587-0	2013

References

#19223	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24998
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39793	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68376	Automatically annotated from API LIST .
#68377	Automatically annotated from API NH .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119391	Collection of Institut Pasteur ; Curators of the CIP; CIP 110547
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Listeria fleischmannii subsp. fleischmannii (DSM 24998, CIP 110547, LMG 26584)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API LIST

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000344175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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