Strain identifier

BacDive ID: 23025

Type strain: Yes

Species: Chryseobacterium arthrosphaerae

Strain Designation: CC-VM-7

Strain history: CIP <- 2010, P. Kämpfer, Giessen Univ., Giessen, Germany: strain CC-VM-7

NCBI tax ID(s): 651561 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 19105

BacDive-ID: 23025

DSM-Number: 25208

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium arthrosphaerae CC-VM-7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from faeces of pill millipede Arthrosphaera magna.

NCBI tax id

  • NCBI tax id: 651561
  • Matching level: species

strain history

@refhistory
19105<- CCUG <- P. Kämpfer, Univ. Giessen, Germany <- A. B. Arun, Yenepoya Univ., Mangalore, Karnataka, India
116513CIP <- 2010, P. Kämpfer, Giessen Univ., Giessen, Germany: strain CC-VM-7

doi: 10.13145/bacdive23025.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium arthrosphaerae
  • full scientific name: Chryseobacterium arthrosphaerae Kämpfer et al. 2010

@ref: 19105

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium arthrosphaerae

full scientific name: Chryseobacterium arthrosphaerae Kämpfer et al. 2010

strain designation: CC-VM-7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29605negative2 µm1 µmrod-shapedno
116513negativerod-shapedno

colony morphology

  • @ref: 61392
  • incubation period: 1 day

pigmentation

  • @ref: 29605
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42264MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116513CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
29605positivegrowth11-36
29605positiveoptimum30mesophilic
42264positivegrowth30mesophilic
61392positivegrowth30-37mesophilic

culture pH

@refabilitytypepH
29605positivegrowth7
29605positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29605aerobe
61392aerobe
116513obligate aerobe

spore formation

  • @ref: 29605
  • spore formation: no

observation

  • @ref: 29605
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2960529864mannitol+carbon source
11651317632nitrate-reduction
11651316301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2960535581indoleyes
11651335581indoleno

metabolite tests

  • @ref: 29605
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
29605catalase+1.11.1.6
29605cytochrome oxidase+1.9.3.1
29605urease+3.5.1.5
116513oxidase-
116513catalase+1.11.1.6
116513urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116513-----++-+-++++-+-+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentsampling date
19105faeces of pill millipede Arthrosphaera magnaArthrosphaera magnaIndiaINDAsia
61392Feces of pill millipede,Arthrosphaera magnaIndiaINDAsia2000
116513Faeces pill millipede, Arthrosphaera magna AttemsIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4210.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_753;97_878;98_1329;99_4210&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: FN398101
  • Sequence Identity:
  • Total samples: 65
  • soil counts: 1
  • aquatic counts: 8
  • animal counts: 53
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
191051Risk group (German classification)
1165131Risk group (French classification)

Sequence information

16S sequences

  • @ref: 19105
  • description: Chryseobacterium arthrosphaerae partial 16S rRNA gene, strain CC-VM-7
  • accession: FN398101
  • length: 1364
  • database: ena
  • NCBI tax ID: 651561

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium arthrosphaerae CC-VM-7GCA_001684965contigncbi651561
66792Chryseobacterium arthrosphaerae CC-VM-72751185876draftimg651561

External links

@ref: 19105

culture collection no.: DSM 25208, CCM 7645, CCUG 57618, CIP 110186, DSM 22218

straininfo link

  • @ref: 87265
  • straininfo: 370341

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19749032Chryseobacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems.Kampfer P, Arun AB, Young CC, Chen WM, Sridhar KR, Rekha PDInt J Syst Evol Microbiol10.1099/ijs.0.016840-02009Animals, Arthropods/*microbiology, Chryseobacterium/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Feces/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny24958763Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.Venil CK, Nordin N, Zakaria ZA, Ahmad WAInt J Syst Evol Microbiol10.1099/ijs.0.063594-02014Artocarpus/*microbiology, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Genetics27795281Draft Genome Sequences of Chryseobacterium artocarpi UTM-3T and Chryseobacterium contaminans C26T, Isolated from Rhizospheres, and Chryseobacterium arthrosphaerae CC-VM-7T, Isolated from the Feces of a Pill Millipede.Jeong JJ, Park B, Oh JY, Mannaa M, Kim YJ, Hong JK, Choi IG, Kim KDGenome Announc10.1128/genomeA.01168-162016Phylogeny
Phylogeny27902284Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae.Jeong JJ, Lee DW, Park B, Sang MK, Choi IG, Kim KDInt J Syst Evol Microbiol10.1099/ijsem.0.0016702017Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, Cucumis sativus/*microbiology, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryEnzymology
Phylogeny31010035Genomic Features, Comparative Genomic Analysis, and Antimicrobial Susceptibility Patterns of Chryseobacterium arthrosphaerae Strain ED882-96 Isolated in Taiwan.Liang CY, Yang CH, Lai CH, Huang YH, Lin JNGenes (Basel)10.3390/genes100403092019Adult, Anti-Bacterial Agents/*pharmacology, Chromosomes, Bacterial/genetics, Chryseobacterium/*classification/drug effects/genetics/isolation & purification, Comparative Genomic Hybridization, DNA, Bacterial/genetics, Drug Resistance, Multiple, Bacterial, Genome Size, Humans, Liver Cirrhosis, Alcoholic/*microbiology, Male, Microbial Sensitivity Tests, Plasmids/genetics, RNA, Ribosomal, 16S/genetics, Substance-Related Disorders/*microbiology, Taiwan, Virulence Factors/genetics, Whole Genome Sequencing/*methodsPathogenicity
Phylogeny31535961Chryseobacterium candidae sp. nov., isolated from a yeast (Candida tropicalis).B I, G K, N S, A S, Ch S, Ch V RInt J Syst Evol Microbiol10.1099/ijsem.0.0037162020Bacterial Typing Techniques, Base Composition, *Candida tropicalis, Chryseobacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19105Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25208)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25208
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29605Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2599528776041
42264Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8018
61392Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57618)https://www.ccug.se/strain?id=57618
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87265Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370341.1StrainInfo: A central database for resolving microbial strain identifiers
116513Curators of the CIPCollection of Institut Pasteur (CIP 110186)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110186