Chryseobacterium arthrosphaerae (DSM 25208, CCM 7645, CCUG 57618)

Name: Chryseobacterium arthrosphaerae (DSM 25208, CCM 7645, CCUG 57618)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23025

Type strain

Strain Designation CC-VM-7

Culture col. no. DSM 25208 CCM 7645 CCUG 57618 CC-VM-7 CIP 110186 1 more

NCBI tax ID(s) 651561

Special Collections DSMZ CCUG Literature strains CIP

History DSMZ <- CCUG <- P. Kämpfer, Univ. Giessen, Germany <- A. B. Arun, Yenepoya Univ., Mangalore, Karnataka, India CIP <- 2010, P. Kämpfer, Giessen Univ., Giessen, Germany: strain CC-VM-7

Links

Chryseobacterium arthrosphaerae CC-VM-7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from faeces of pill millipede Arthrosphaera magna.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 370341

CCM7645,CCUG 57618,DSM 22218,CIP 110186

@ref 20215

Last LPSN update 2026-05-29 08:30:21

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium arthrosphaerae

Full scientific name Chryseobacterium arthrosphaerae Kämpfer et al. 2010

BacDive ID	Other strains from **Chryseobacterium arthrosphaerae** (1)	Type strain
157000	C. arthrosphaerae CCUG 68506

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29605	negative	2 µm	1 µm	rod-shaped
125439	negative				99.53
116513	negative			rod-shaped

Colony morphology

61392

Incubation period1 day

Pigmentation

29605

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
42264	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116513	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
29605	positive	growth	11-36
29605	positive	optimum	30
42264	positive	growth	30
61392	positive	growth	30-37

Culture pH

@ref	Ability	Type	PH
29605	positive	optimum	7
29605	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29605	aerobe
61392	aerobe
116513	obligate aerobe
125439	obligate aerobe	95.147

Spore formation

@ref	Spore formation	Confidence
29605
125439		99.483

Observation

29605

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29605	29864 ChEBI	mannitol	+	carbon source
116513	17632 ChEBI	nitrate	-	reduction
116513	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29605	35581 ChEBI	indole
116513	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29605	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29605	catalase	+	1.11.1.6
116513	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
29605	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116513	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
29605	urease	+	3.5.1.5
116513	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116513	-	-	-	-	-	+	+	-	+	-	+	+	+	+	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date
19105	faeces of pill millipede Arthrosphaera magna	Arthrosphaera magna	India	IND	Asia
61392	Feces of pill millipede,Arthrosphaera magna		India	IND	Asia	2000
116513	Faeces pill millipede, Arthrosphaera magna Attems		India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence FN398101 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	8
Soil Samples	1
Animal Samples	53
Plant Samples	3
Total Samples	65

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19105	1	Risk group (German classification) According to TRBA 466
116513	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM168496v1 assembly for Chryseobacterium arthrosphaerae CC-VM-7	contig	GCA_001684965	2751185876	651561	71.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19105	Chryseobacterium arthrosphaerae partial 16S rRNA gene, strain CC-VM-7	FN398101	1364		651561

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM168496v1 assembly for Chryseobacterium arthrosphaerae CC-VM-7
NCBI: GCA_001684965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.15	no
125439	gram_stain	BacteriaNetⓘ	negative	99.53	no
125439	spore_formation	BacteriaNetⓘ	no	99.48	no
125439	motility	BacteriaNetⓘ	no	83.32	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genomic Features, Comparative Genomic Analysis, and Antimicrobial Susceptibility Patterns of Chryseobacterium arthrosphaerae Strain ED882-96 Isolated in Taiwan.	Liang CY, Yang CH, Lai CH, Huang YH, Lin JN	Genes (Basel)	10.3390/genes10040309	2019
Genetics	Draft Genome Sequences of Chryseobacterium artocarpi UTM-3T and Chryseobacterium contaminans C26T, Isolated from Rhizospheres, and Chryseobacterium arthrosphaerae CC-VM-7T, Isolated from the Feces of a Pill Millipede.	Jeong JJ, Park B, Oh JY, Mannaa M, Kim YJ, Hong JK, Choi IG, Kim KD	Genome Announc	10.1128/genomeA.01168-16	2016
Phylogeny	Chryseobacterium candidae sp. nov., isolated from a yeast (Candida tropicalis).	B I, G K, N S, A S, Ch S, Ch V R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003716	2020
Phylogeny	Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae.	Jeong JJ, Lee DW, Park B, Sang MK, Choi IG, Kim KD	Int J Syst Evol Microbiol	10.1099/ijsem.0.001670	2017
Phylogeny	Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.	Venil CK, Nordin N, Zakaria ZA, Ahmad WA	Int J Syst Evol Microbiol	10.1099/ijs.0.063594-0	2014
Phylogeny	Chryseobacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems.	Kampfer P, Arun AB, Young CC, Chen WM, Sridhar KR, Rekha PD	Int J Syst Evol Microbiol	10.1099/ijs.0.016840-0	2009

References

#19105	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25208
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25995	IJSEM 1765 2010 ( DOI 10.1099/ijs.0.016840-0 , PubMed 19749032 )
#29605	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25995
#42264	; Curators of the CIP;
#61392	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57618
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116513	Collection of Institut Pasteur ; Curators of the CIP; CIP 110186
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Chryseobacterium arthrosphaerae (DSM 25208, CCM 7645, CCUG 57618)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001684965

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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