Strain identifier

BacDive ID: 22999

Type strain: No

Species: Enterobacter kobei

Variant: Isotype of BacDive ID 131083

Strain history: <- JCM <- R. Sakazaki, National Institute of Health, Tokyo <- K. Miki, Kobe City General Hospital, Kobe

NCBI tax ID(s): 208224 (species)

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General

@ref: 18817

BacDive-ID: 22999

DSM-Number: 27110

keywords: Bacteria, mesophilic

description: Enterobacter kobei DSM 27110 is a mesophilic bacterium that was isolated from blood of a diabetic patient.

NCBI tax id

  • NCBI tax id: 208224
  • Matching level: species

strain history

  • @ref: 18817
  • history: <- JCM <- R. Sakazaki, National Institute of Health, Tokyo <- K. Miki, Kobe City General Hospital, Kobe

doi: 10.13145/bacdive22999.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter kobei
  • full scientific name: Enterobacter kobei Kosako et al. 1997

@ref: 18817

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter kobei

full scientific name: Enterobacter kobei Kosako et al. 1997 emend. Hoffmann et al. 2005

variant: Isotype of BacDive ID 131083

type strain: no

Morphology

multimedia

  • @ref: 18817
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27110.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18817TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
39818MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
120454CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
18817positivegrowth37mesophilic
39818positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
18817-+-++----++++-++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 18817
  • sample type: blood of a diabetic patient
  • geographic location: Kobe
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 18817
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 18817

culture collection no.: DSM 27110, JCM 8580, NIH 1485-79, CIP 105566, CCUG 49023, ATCC BAA 260

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny8824173Enterobacter kobei sp. nov., a new species of the family Enterobacteriaceae resembling Enterobacter cloacae.Kosako Y, Tamura K, Sakazaki R, Miki KCurr Microbiol10.1007/s0028499001101996Bacteriological Techniques, Culture Media/metabolism, DNA, Bacterial/analysis, Enterobacter/*classification/genetics/metabolism, Enterobacter cloacae/genetics/metabolism, Nucleic Acid Hybridization, PhenotypeMetabolism
29472760Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo ZEvol Bioinform Online10.1177/11769343187548782018

Reference

@idauthorscataloguedoi/urltitle
18817Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27110)https://www.dsmz.de/collection/catalogue/details/culture/DSM-27110
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39818Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17599
68368Automatically annotated from API 20E
120454Curators of the CIPCollection of Institut Pasteur (CIP 105566)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105566