Enterobacter kobei (DSM 27110, JCM 8580, NIH 1485-79)

Name: Enterobacter kobei (DSM 27110, JCM 8580, NIH 1485-79)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22999

Type strain

Variant Isotype of BacDive ID 131083

Culture col. no. DSM 27110 JCM 8580 NIH 1485-79 CIP 105566 CCUG 49023 1 more

NCBI tax ID(s) 1354261 208224

Special Collections DSMZ CCUG JCM CIP

Links

Enterobacter kobei DSM 27110 is a mesophilic prokaryote that was isolated from blood of a diabetic patient.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 46277

ATCC BAA-260,CIP 105566,JCM 8580,DSM 13645,CCUG 49023,VTT E-052846,LMG 25836,LMG 26407,DSM 13545,DSM 27110,CCUG 75193

@ref 20215

Last LPSN update 2025-12-16 09:52:33

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Enterobacter

Species Enterobacter kobei

Full scientific name Enterobacter kobei Kosako et al. 1997

BacDive ID	Other strains from **Enterobacter kobei** (2)	Type strain
131083	E. kobei DSM 13645, CCUG 49023, JCM 8580, NIH 1485-79, ... (type strain)
155827	E. kobei CCUG 59410

Morphology

Multimedia

@ref:	18817
multimedia content:	DSM_27110.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27110.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18817	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
39818	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
120454	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18817	positive	growth	37	mesophilic
39818	positive	growth	30	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68368	15688 ChEBI	acetoin	+	from API 20E
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18817	-	+	-	+	+	-	-	-	-	+	+	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18817	blood of a diabetic patient	Kobe	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18817	2	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Enterobacter kobei strain ATCC BAA-260 16S ribosomal RNA gene, partial sequence.	KF516242	1347		208224

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Effect of Processing Treatment and Modified Atmosphere Packing on Carrot's Microbial Community Structure by Illumina MiSeq Sequencing.	Ratajczak K, Staninska-Pieta J, Czarny J, Cyplik P, Wolko L, Piotrowska-Cyplik A.	Molecules	10.3390/molecules27092830	2022
Development of a One-Step Multiplex PCR Assay for Differential Detection of Four species (Enterobacter cloacae, Enterobacter hormaechei, Enterobacter roggenkampii, and Enterobacter kobei) Belonging to Enterobacter cloacae Complex With Clinical Significance.	Ji Y, Wang P, Xu T, Zhou Y, Chen R, Zhu H, Zhou K.	Front Cell Infect Microbiol	10.3389/fcimb.2021.677089	2021
First Case Report of Detection of Multidrug-Resistant Enterobacter hormaechei in Clinical Sample from an Aborted Ruminant.	Zaitsev SS, Khizhnyakova MA, Feodorova VA.	Microorganisms	10.3390/microorganisms10051036	2022
dnaJ: a New Approach to Identify Species within the Genus Enterobacter.	Hernandez-Alonso E, Barreault S, Augusto LA, Jatteau P, Villet M, Tissieres P, Doucet-Populaire F, Bourgeois-Nicolaos N, SENSE Group.	Microbiol Spectr	10.1128/spectrum.01242-21	2021
Unveiling chlorpyrifos mineralizing and tomato plant-growth activities of Enterobacter sp. strain HSTU-ASh6 using biochemical tests, field experiments, genomics, and in silico analyses.	Haque MA, Hossain MS, Ahmad I, Akbor MA, Rahman A, Manir MS, Patel HM, Cho KM.	Front Microbiol	10.3389/fmicb.2022.1060554	2022
A robotic DNA purification protocol and real-time PCR for the detection of Enterobacter sakazakii in powdered infant formulae.	Derzelle S, Dilasser F.	BMC Microbiol	10.1186/1471-2180-6-100	2006
Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.	Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo Z	Evol Bioinform Online	10.1177/1176934318754878	2018
Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov.	Wu W, Feng Y, Zong Z.	mSystems	10.1128/msystems.00527-20	2020
Enterobacter kobei sp. nov., a new species of the family Enterobacteriaceae resembling Enterobacter cloacae.	Kosako Y, Tamura K, Sakazaki R, Miki K	Curr Microbiol	10.1007/s002849900110	1996

References

#18817	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27110
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39818	; Curators of the CIP;
#68368	Automatically annotated from API 20E .
#120454	Collection of Institut Pasteur ; Curators of the CIP; CIP 105566
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterobacter kobei (DSM 27110, JCM 8580, NIH 1485-79)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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