Strain identifier
BacDive ID: 22965
Type strain: 
Species: Acetivibrio thermocellus
Strain Designation: YS
Strain history: <- R. Lamed, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; YS <- R. Lamed {1980}
NCBI tax ID(s): 1515 (species)
version 9.3 (current version)
General
@ref: 18805
BacDive-ID: 22965
DSM-Number: 25991
keywords: genome sequence, Bacteria, anaerobe, thermophilic
description: Acetivibrio thermocellus YS is an anaerobe, thermophilic bacterium that was isolated from hot spring soil sample.
NCBI tax id
- NCBI tax id: 1515
- Matching level: species
strain history
- @ref: 18805
- history: <- R. Lamed, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; YS <- R. Lamed {1980}
doi: 10.13145/bacdive22965.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio thermocellus
- full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
synonyms
@ref synonym 20215 Hungateiclostridium thermocellum 20215 Ruminiclostridium thermocellum 20215 Clostridium thermocellum
@ref: 18805
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Acetivibrio
species: Acetivibrio thermocellus
full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
strain designation: YS
type strain: no
Culture and growth conditions
culture medium
- @ref: 18805
- name: ACETIVIBRIO MEDIUM (DSMZ Medium 122)
- growth: yes
- link: https://mediadive.dsmz.de/medium/122
- composition: Name: ACETIVIBRIO MEDIUM (DSMZ Medium 122) Composition: Cellulose 10.0 g/l (optional) Na2-ß-glycerophosphate x 5 H2O 6.0 g/l K2HPO4 5.5 g/l Cellobiose 5.0 g/l Yeast extract 4.5 g/l MgCl2 x 6 H2O 2.6 g/l KH2PO4 1.43 g/l (NH4)2SO4 1.3 g/l L-Glutathione 0.25 g/l CaCl2 x 2 H2O 0.13 g/l FeSO4 x 7 H2O 0.0011 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 18805
- growth: positive
- type: growth
- temperature: 60
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 18805 | anaerobe | |
| 125438 | anaerobe | 95.246 |
| 125439 | anaerobe | 98.4 |
Isolation, sampling and environmental information
isolation
- @ref: 18805
- sample type: hot spring soil sample
- geographic location: WY, Yellowstone National Park
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 18805
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Acetivibrio thermocellus YS
- accession: GCA_000255575
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1094188
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 57.414 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 95.246 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.944 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 83.939 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | yes | 68.059 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 77.705 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 88 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 84 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 84 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 98.4 |
External links
@ref: 18805
culture collection no.: DSM 25991
straininfo link
- @ref: 87212
- straininfo: 397875
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18805 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25991) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25991 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87212 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397875.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |