Strain identifier
BacDive ID: 22965
Type strain:
Species: Acetivibrio thermocellus
Strain Designation: YS
Strain history: <- R. Lamed, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; YS <- R. Lamed {1980}
NCBI tax ID(s): 1515 (species)
General
@ref: 18805
BacDive-ID: 22965
DSM-Number: 25991
keywords: genome sequence, Bacteria, anaerobe, thermophilic
description: Acetivibrio thermocellus YS is an anaerobe, thermophilic bacterium that was isolated from hot spring soil sample.
NCBI tax id
- NCBI tax id: 1515
- Matching level: species
strain history
- @ref: 18805
- history: <- R. Lamed, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; YS <- R. Lamed {1980}
doi: 10.13145/bacdive22965.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio thermocellus
- full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
synonyms
@ref synonym 20215 Ruminiclostridium thermocellum 20215 Clostridium thermocellum 20215 Hungateiclostridium thermocellum
@ref: 18805
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Acetivibrio
species: Acetivibrio thermocellus
full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
strain designation: YS
type strain: no
Culture and growth conditions
culture medium
- @ref: 18805
- name: ACETIVIBRIO MEDIUM (DSMZ Medium 122)
- growth: yes
- link: https://mediadive.dsmz.de/medium/122
- composition: Name: ACETIVIBRIO MEDIUM (DSMZ Medium 122) Composition: Cellulose 10.0 g/l (optional) Na2-ß-glycerophosphate x 5 H2O 6.0 g/l K2HPO4 5.5 g/l Cellobiose 5.0 g/l Yeast extract 4.5 g/l MgCl2 x 6 H2O 2.6 g/l KH2PO4 1.43 g/l (NH4)2SO4 1.3 g/l L-Glutathione 0.25 g/l CaCl2 x 2 H2O 0.13 g/l FeSO4 x 7 H2O 0.0011 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 18805
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 18805
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 18805
- sample type: hot spring soil sample
- geographic location: WY, Yellowstone National Park
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Environmental | #Terrestrial | #Soil |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 18805
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Acetivibrio thermocellus YS
- accession: GCA_000255575
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1094188
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 52.115 | no |
flagellated | no | 70.576 | no |
gram-positive | yes | 52.031 | no |
anaerobic | yes | 99.999 | yes |
aerobic | no | 99.187 | yes |
halophile | no | 94.165 | no |
spore-forming | yes | 94.636 | no |
glucose-util | yes | 84.309 | no |
thermophile | yes | 99.65 | yes |
glucose-ferment | yes | 57.702 | no |
External links
@ref: 18805
culture collection no.: DSM 25991
straininfo link
- @ref: 87212
- straininfo: 397875
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
18805 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25991) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25991 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
87212 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397875.1 | StrainInfo: A central database for resolving microbial strain identifiers |