Strain identifier
BacDive ID: 22939
Type strain: 
Species: Brevibacterium senegalense
Strain Designation: JC43
Strain history: DSM 25783 <-- J.-C. Lagier; Fac. Med., Aix-Marseille Univ., France; JC43.
NCBI tax ID(s): 1033736 (species)
version 8.1 (current version)
General
@ref: 19272
BacDive-ID: 22939
DSM-Number: 25783
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Brevibacterium senegalense JC43 is a mesophilic, Gram-positive bacterium that was isolated from feces of a healthy 16-year-old man.
NCBI tax id
- NCBI tax id: 1033736
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19272 | <- J.-C. Lagier, Timone Hospital, Marseille, France; JC43 |
| 67770 | DSM 25783 <-- J.-C. Lagier; Fac. Med., Aix-Marseille Univ., France; JC43. |
doi: 10.13145/bacdive22939.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Brevibacteriaceae
- genus: Brevibacterium
- species: Brevibacterium senegalense
- full scientific name: Brevibacterium senegalense Kokcha et al. 2013
@ref: 19272
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Brevibacteriaceae
genus: Brevibacterium
species: Brevibacterium senegalense
full scientific name: Brevibacterium senegalense Kokcha et al. 2013
strain designation: JC43
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 19272
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19272 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.997
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 19272 | feces of a healthy 16-year-old man | Senegal | SEN | Africa | |
| 67770 | Stool from a healthy 16-year-old male Senegalese patient | Senegal | SEN | Africa | Dielmo (a rural village in the Guinean-Sudanian zone in Senegal) |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Male |
taxonmaps
- @ref: 69479
- File name: preview.99_3880.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15817;96_1988;97_2390;98_2952;99_3880&stattab=map
- Last taxonomy: Brevibacterium senegalense subclade
- 16S sequence: JF824806
- Sequence Identity:
- Total samples: 5843
- soil counts: 721
- aquatic counts: 388
- animal counts: 4499
- plant counts: 235
Safety information
risk assessment
- @ref: 19272
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19272
- description: Brevibacterium senegalense strain JC43 16S ribosomal RNA gene, partial sequence
- accession: JF824806
- length: 1491
- database: ena
- NCBI tax ID: 1033736
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Brevibacterium senegalense JC43 | 2547132136 | draft | img | 1033736 |
| 67770 | Brevibacterium senegalense JC43 | GCA_000285835 | scaffold | ncbi | 1033736 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 19272 | 70 | sequence analysis |
| 67770 | 70 | genome sequence analysis |
Genome-based predictions
predictions
- trait: spore-forming
- prediction: no
- confidence: 79
- training_data: no
External links
@ref: 19272
culture collection no.: DSM 25783, CSUR P155, JCM 30545
straininfo link
- @ref: 87187
- straininfo: 403050
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19272 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25783) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25783 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 87187 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403050.1 | StrainInfo: A central database for resolving microbial strain identifiers |