Brevibacterium senegalense (DSM 25783, CSUR P155, JCM 30545)

Name: Brevibacterium senegalense (DSM 25783, CSUR P155, JCM 30545)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22939

Type strain

Strain Designation JC43

Culture col. no. DSM 25783 CSUR P155 JCM 30545 JC43

NCBI tax ID(s) 1033736

Special Collections DSMZ JCM Cadoret human gut

Links

Brevibacterium senegalense JC43 is a mesophilic prokaryote that was isolated from feces of a healthy 16-year-old man.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403050

JCM 30545,DSM 25783

@ref 20215

Last LPSN update 2025-12-16 09:52:32

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium senegalense

Full scientific name Brevibacterium senegalense Kokcha et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19272	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19272	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19272	feces of a healthy 16-year-old man		Senegal	SEN	Africa
67770	Stool from a healthy 16-year-old male Senegalese patient	Dielmo (a rural village in the Guinean-Sudanian zone in Senegal)	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence JF824806 (>99% sequence identity) for Brevibacterium senegalense subclade from Microbeatlas

Aquatic Samples	388
Soil Samples	721
Animal Samples	4499
Plant Samples	235
Total Samples	5843

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19272	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM28583v2 assembly for Brevibacterium senegalense JC43	scaffold	GCA_000285835	1033736.3	2547132136	1033736	59.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19272	Brevibacterium senegalense strain JC43 16S ribosomal RNA gene, partial sequence	JF824806	1491		1033736

GC content

@ref	GC-content (mol%)	Method
19272	70	sequence analysis
67770	70	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevibacterium senegalense JC43
NCBI: GCA_000285835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	51.50	no
125439	motility	BacteriaNetⓘ	no	72.80	no
125439	gram_stain	BacteriaNetⓘ	positive	98.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	82.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Systematically investigating and identifying bacteriocins in the human gut microbiome.	Zhang D, Zou Y, Shi Y, Zhang J, Liu J, Wu G, Zhang J, Gao Y, Chen M, Li YX.	Cell Genom	10.1016/j.xgen.2025.100983	2025
	A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome.	Zhang D, Zhang J, Kalimuthu S, Liu J, Song ZM, He BB, Cai P, Zhong Z, Feng C, Neelakantan P, Li YX.	Microbiome	10.1186/s40168-023-01540-y	2023
Genetics	Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov.	Kokcha S, Ramasamy D, Lagier JC, Robert C, Raoult D, Fournier PE.	Stand Genomic Sci	10.4056/sigs.3256677	2012

References

#19272	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25783
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium senegalense (DSM 25783, CSUR P155, JCM 30545)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000285835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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