Strain identifier

BacDive ID: 224

Type strain: Yes

Species: Aerococcus sanguinicola

Strain Designation: SS-1647

Strain history: CIP <- 2000, CCUG <- J. Christensen, SSI, Copenhagen, Denmark: strain SS-1647

NCBI tax ID(s): 119206 (species)

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General

@ref: 5920

BacDive-ID: 224

DSM-Number: 15633

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Aerococcus sanguinicola SS-1647 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from human blood.

NCBI tax id

  • NCBI tax id: 119206
  • Matching level: species

strain history

@refhistory
5920<- CIP <- CCUG <- J. Christensen, SSIC
67770CIP 106533 <-- CCUG 43001 <-- J. Christensen SS-1647.
122420CIP <- 2000, CCUG <- J. Christensen, SSI, Copenhagen, Denmark: strain SS-1647

doi: 10.13145/bacdive224.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Aerococcus
  • species: Aerococcus sanguinicola
  • full scientific name: Aerococcus sanguinicola corrig. Lawson et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Aerococcus sanguicola

@ref: 5920

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Aerococcus

species: Aerococcus sanguinicola

full scientific name: Aerococcus sanguinicola Lawson et al. 2001 emend. Tohno et al. 2014

strain designation: SS-1647

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
22977positivecoccus-shaped
69480no98.097
69480positive100
122420positivecoccus-shapedno

colony morphology

@reftype of hemolysishemolysis abilitycolony sizemedium used
22977alpha1<1.0 mmColumbia horse-blood agar
122420

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5920BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
5920COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
22977Columbia horse-blood agaryes
40323MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122420CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
5920positivegrowth37mesophilic
40323positivegrowth37mesophilic
67770positivegrowth37mesophilic
122420positivegrowth25-41
122420nogrowth10psychrophilic
122420nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
22977facultative anaerobe
122420facultative anaerobe

spore formation

@refspore formationconfidence
22977no
69481no98
69480no99.978

halophily

@refsaltgrowthtested relationconcentration
22977NaClpositivegrowth6.5 %
122420NaClnogrowth6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2297723456cyclodextrin-builds acid from
2297718333D-arabitol-builds acid from
2297716988D-ribose-builds acid from
2297765327D-xylose-builds acid from
2297728087glycogen-builds acid from
2297730849L-arabinose-builds acid from
2297717716lactose-builds acid from
2297729864mannitol-builds acid from
229776731melezitose-builds acid from
2297728053melibiose-builds acid from
22977320055methyl beta-D-glucopyranoside-builds acid from
2297727941pullulan-builds acid from
2297716634raffinose-builds acid from
2297730911sorbitol-builds acid from
2297733954tagatose-builds acid from
2297717306maltose+builds acid from
2297717992sucrose+builds acid from
2297727082trehalose+builds acid from
22977606565hippurate+hydrolysis
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
1224204853esculin-hydrolysis
122420606565hippurate+hydrolysis
12242017632nitrate-reduction
12242016301nitrite-reduction

metabolite production

  • @ref: 22977
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 122420
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
22977acid phosphatase+3.1.3.2
22977alpha-galactosidase-3.2.1.22
22977alpha-glucosidase-3.2.1.20
22977alpha-mannosidase-3.2.1.24
22977arginine dihydrolase+3.5.3.6
22977beta-galactosidase-3.2.1.23
22977beta-glucosidase-3.2.1.21
22977beta-glucuronidase+3.2.1.31
22977beta-mannosidase-3.2.1.25
22977catalase-1.11.1.6
22977chymotrypsin-3.4.4.5
22977cystine arylamidase+3.4.11.3
22977cytochrome oxidase-1.9.3.1
22977esterase (C 4)+
22977esterase lipase (C 8)-
22977glycyl tryptophan arylamidase-
22977leucine arylamidase+3.4.11.1
22977lipase (C 14)-
22977N-acetyl-beta-glucosaminidase-3.2.1.52
22977phosphoamidase-3.9.1.1
22977pyroglutamic acid arylamidase+
22977tripeptide aminopeptidase-3.4.11.4
22977trypsin-3.4.21.4
22977urease-3.5.1.5
22977valine arylamidase+
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
122420oxidase-
122420beta-galactosidase-3.2.1.23
122420alcohol dehydrogenase-1.1.1.1
122420catalase-1.11.1.6
122420gamma-glutamyltransferase+2.3.2.2
122420lysine decarboxylase-4.1.1.18
122420ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122420-+++-+----+---++----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122420+---------+++--------+-----+--++---++--+--------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5920human bloodEsbjergDenmarkDNKEurope
55633Human bloodEsbjergDenmarkDNKEurope
67770Human blood culture
122420Human, BloodEsbjergDenmarkDNKEurope

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_2694.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_1435;97_1712;98_2090;99_2694&stattab=map
  • Last taxonomy: Aerococcus sanguinicola subclade
  • 16S sequence: LC145565
  • Sequence Identity:
  • Total samples: 5953
  • soil counts: 431
  • aquatic counts: 852
  • animal counts: 4543
  • plant counts: 127

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
5920yes, in single cases1Risk group (German classification)
1224201Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aerococcus sanguinicola strain CCUG 43001 16S-23S ribosomal RNA intergenic spacer, partial sequenceJN977131210ena119206
5920Aerococcus sp. CCUG43001 16S rRNA geneAJ2765121499ena119206
67770Aerococcus sanguinicola gene for 16S ribosomal RNA, partial sequence, strain: JCM 11549LC1455651489ena119206

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aerococcus sanguinicola CCUG43001GCA_001543145completencbi119206
66792Aerococcus sanguinicola strain CCUG43001119206.53completepatric119206
66792Aerococcus sanguinicola CCUG430012687453481completeimg119206

GC content

  • @ref: 5920
  • GC-content: 48.4
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
flagellatedno97.889no
gram-positiveyes93.668no
anaerobicno87.569no
aerobicno95.701yes
halophileyes92.607yes
spore-formingno94.532yes
thermophileno99.237yes
glucose-utilyes86.624no
motileno96.057no
glucose-fermentyes87.683no

External links

@ref: 5920

culture collection no.: DSM 15633, CCUG 43001, CDC 348-00, CIP 106533, JCM 11549, ATCC BAA 465

straininfo link

  • @ref: 69907
  • straininfo: 87801

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11321093Aerococcus sanguicola sp. nov., isolated from a human clinical source.Lawson PA, Falsen E, Truberg-Jensen K, Collins MDInt J Syst Evol Microbiol10.1099/00207713-51-2-4752001Blood/*microbiology, DNA, Ribosomal/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Streptococcaceae/*classification/genetics/isolation & purificationGenetics
Genetics27103727Complete Genome Sequences of Aerococcus christensenii CCUG 28831T, Aerococcus sanguinicola CCUG 43001T, Aerococcus urinae CCUG 36881T, Aerococcus urinaeequi CCUG 28094T, Aerococcus urinaehominis CCUG 42038 BT, and Aerococcus viridans CCUG 4311T.Carkaci D, Dargis R, Nielsen XC, Skovgaard O, Fuursted K, Christensen JJGenome Announc10.1128/genomeA.00302-162016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5920Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15633)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15633
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
22977P. A. Lawson,E. Falsen,K. Truberg-Jensen,M. D. Collins10.1099/00207713-51-2-475Aerococcus sanguicola sp. nov., isolated from a human clinical source.IJSEM 51: 475-479 200111321093
40323Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18674
55633Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43001)https://www.ccug.se/strain?id=43001
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69907Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87801.1StrainInfo: A central database for resolving microbial strain identifiers
122420Curators of the CIPCollection of Institut Pasteur (CIP 106533)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106533