Strain identifier

BacDive ID: 221

Type strain: Yes

Species: Aerococcus viridans

Strain Designation: M1

Culture col. no.: DSM 20340, ATCC 11563, CCM 1914, IAM 13649, JCM 20461, NCDO 1225, NCTC 8251, WDCM 00061, CCUG 4311

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General

@ref: 8745

BacDive-ID: 221

DSM-Number: 20340

keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic, human pathogen

description: Aerococcus viridans M1 is a microaerophile, mesophilic human pathogen that was isolated from air.

strain history: <- NCDO <- NCTC <- R.E.D. Williams, M1

doi: 10.13145/bacdive221.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Aerococcus
  • species: Aerococcus viridans
  • full scientific name: Aerococcus viridans Williams et al. 1953 (Approved Lists 1980)

@ref: 8745

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Aerococcus

species: Aerococcus viridans

full scientific name: Aerococcus viridans Williams et al. 1953 emend. Tohno et al. 2014

strain designation: M1

type strain: yes

Morphology

colony morphology

  • @ref: 44731
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
22982MRS mediumyes
36411MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
8745TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf

culture temp

@refgrowthtypetemperaturerange
36411positivegrowth30mesophilic
8745positivegrowth30mesophilic
44731nogrowth22psychrophilic
44731positivegrowth37mesophilic
44731positivegrowth30-42

Physiology and metabolism

oxygen tolerance

  • @ref: 44731
  • oxygen tolerance: microaerophile

murein

  • @ref: 8745
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
22982168082-dehydro-D-gluconate-builds acid from
22982174265-dehydro-D-gluconate-builds acid from
2298227613amygdalin-builds acid from
2298218305arbutin-builds acid from
2298215963ribitol-builds acid from
2298217108D-arabinose-builds acid from
2298218333D-arabitol-builds acid from
2298228847D-fucose-builds acid from
2298262318D-lyxose-builds acid from
2298217924D-sorbitol-builds acid from
2298216443D-tagatose-builds acid from
2298265327D-xylose-builds acid from
2298216813galactitol-builds acid from
2298217113erythritol-builds acid from
2298228066gentiobiose-builds acid from
2298224265gluconate-builds acid from
2298228087glycogen-builds acid from
2298217268myo-inositol-builds acid from
2298215443inulin-builds acid from
2298230849L-arabinose-builds acid from
2298218403L-arabitol-builds acid from
2298218287L-fucose-builds acid from
2298262345L-rhamnose-builds acid from
2298217266L-sorbose-builds acid from
2298265328L-xylose-builds acid from
229826731melezitose-builds acid from
2298228053melibiose-builds acid from
2298243943methyl alpha-D-mannoside-builds acid from
2298274863methyl beta-D-xylopyranoside-builds acid from
2298216634raffinose-builds acid from
2298217814salicin-builds acid from
2298228017starch-builds acid from
2298227082trehalose-builds acid from
2298217151xylitol-builds acid from
2298229016arginine-hydrolysis
2298217057cellobiose+builds acid from
2298215824D-fructose+builds acid from
2298212936D-galactose+builds acid from
2298217634D-glucose+builds acid from
2298216899D-mannitol+builds acid from
2298216024D-mannose+builds acid from
2298216988D-ribose+builds acid from
2298217754glycerol+builds acid from
2298217716lactose+builds acid from
2298217306maltose+builds acid from
22982320061methyl alpha-D-glucopyranoside+builds acid from
22982506227N-acetylglucosamine+builds acid from
2298217992sucrose+builds acid from
2298232528turanose+builds acid from
229824853esculin+hydrolysis
22982606565hippurate+hydrolysis

enzymes

@refvalueactivityec
22982acid phosphatase-3.1.3.2
22982alkaline phosphatase+3.1.3.1
22982alpha-fucosidase-3.2.1.51
22982alpha-galactosidase-3.2.1.22
22982alpha-glucosidase-3.2.1.20
22982alpha-mannosidase-3.2.1.24
22982beta-galactosidase-3.2.1.23
22982beta-glucosidase-3.2.1.21
22982beta-glucuronidase-3.2.1.31
22982beta-mannosidase-3.2.1.25
22982chymotrypsin-3.4.4.5
22982cystine arylamidase-3.4.11.3
22982esterase (C 4)+
22982esterase lipase (C 8)+
22982glycyl tryptophan arylamidase-
22982leucine arylamidase-3.4.11.1
22982lipase (C 14)-
22982N-acetyl-beta-glucosaminidase-3.2.1.52
22982naphthol-AS-BI-phosphohydrolase+
22982pyrrolidonyl arylamidase-3.4.19.3
22982tripeptide aminopeptidase-3.4.11.4
22982trypsin-3.4.21.4
22982urease-3.5.1.5
22982valine arylamidase-

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44731C14:0714
    44731C16:031.816
    44731C18:011.418
    44731C16:1 ω9c16.515.774
    44731C18:1 ω9c25.417.769
    44731C18:2 ω6,9c/C18:0 ANTE5.117.724
    44731C20:1 ω9c2.819.77
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
44731---+----------++++--

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
44731---++++++++---+-----+++---

API STA

@refGLUFRUMNEMALLACTREMANXLTMELNITPALVPRAFXYLSACMDGNAGADHURELSTR
44731-+++++++------++++--

Isolation, sampling and environmental information

isolation

@refsample type
8745air
44731Air

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

Safety information

risk assessment

  • @ref: 8745
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aerococcus viridans strain CCUG 4311 16S-23S ribosomal RNA intergenic spacer, partial sequenceJN977134231ena1377
20218Aerococcus viridans gene for 16S rRNA, partial sequence, strain: NBRC 12219AB6802621474ena1377
8745Aerococcus viridans strain ATCC 11563 16S ribosomal RNA gene, complete sequenceM587971552ena655812

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aerococcus viridans CCUG4311GCA_001543285completencbi1377
66792Aerococcus viridans NCTC8251GCA_900445095contigncbi1377
66792Aerococcus viridans ATCC 11563 = CCUG 4311GCA_000178435contigncbi655812
66792Aerococcus viridans NCTC7595GCA_900445105contigncbi1377
66792Aerococcus viridans FDAARGOS_249GCA_002083135contigncbi1377
66792Aerococcus viridans UMB0240GCA_002871935scaffoldncbi1377
66792Aerococcus viridans 32-41-5GCA_002280005scaffoldncbi1377
66792Aerococcus viridans ATCC 11563655812.3wgspatric655812
66792Aerococcus viridans strain 32-41-51377.12wgspatric1377
66792Aerococcus viridans strain CCUG43111377.3completepatric1377
66792Aerococcus viridans strain FDAARGOS_2491377.11wgspatric1377
66792Aerococcus viridans strain FDAARGOS_672 strain Not applicable1377.32completepatric1377
66792Aerococcus viridans strain NCTC75951377.14wgspatric1377
66792Aerococcus viridans strain NCTC82511377.15wgspatric1377
66792Aerococcus viridans strain UMB02401377.13patric1377

GC content

@refGC-contentmethod
874538.5
874540.2high performance liquid chromatography (HPLC)

External links

@ref: 8745

culture collection no.: DSM 20340, ATCC 11563, CCM 1914, IAM 13649, JCM 20461, NCDO 1225, NCTC 8251, WDCM 00061, CCUG 4311

straininfo link

@refpassport
20218http://www.straininfo.net/strains/41058
20218http://www.straininfo.net/strains/41055
20218http://www.straininfo.net/strains/41056
20218http://www.straininfo.net/strains/164102
20218http://www.straininfo.net/strains/745687
20218http://www.straininfo.net/strains/148411
20218http://www.straininfo.net/strains/41061
20218http://www.straininfo.net/strains/866244

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8745Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20340)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20340
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
22982Masanori Tohno,Maki Kitahara,Shuichi Matsuyama,Koji Kimura,Moriya Ohkuma,Kiyoshi Tajima10.1099/ijs.0.058081-0Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicolaIJSEM 64: 1229-1236 2014
36411Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18978
44731Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 4311)https://www.ccug.se/strain?id=4311
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)