Strain identifier

BacDive ID: 1863

Type strain: Yes

Species: Brevibacterium aurantiacum

Strain Designation: KC

Strain history: CIP <- 1963, N. Grecz, Brevibacterium linens <- ATCC <- R.S. Breed: strain KC

NCBI tax ID(s): 273384 (species)

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General

@ref: 8805

BacDive-ID: 1863

DSM-Number: 20426

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Brevibacterium aurantiacum KC is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from camembert cheese.

NCBI tax id

  • NCBI tax id: 273384
  • Matching level: species

strain history

@refhistory
8805<- H. Seiler <- ATCC <- R.S. Breed, KC <- Yale
67770NCDO 739 <-- NCIB 8546 <-- ATCC 9175 <-- R. S. Breed strain KC <-- M. W. Yale.
116556CIP <- 1963, N. Grecz, Brevibacterium linens <- ATCC <- R.S. Breed: strain KC

doi: 10.13145/bacdive1863.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Brevibacteriaceae
  • genus: Brevibacterium
  • species: Brevibacterium aurantiacum
  • full scientific name: Brevibacterium aurantiacum Gavrish et al. 2005

@ref: 8805

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium aurantiacum

full scientific name: Brevibacterium aurantiacum Gavrish et al. 2005

strain designation: KC

type strain: yes

Morphology

cell morphology

  • @ref: 116556
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8805TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33417MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116556CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
116556CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8805positivegrowth30mesophilic
33417positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116556
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 116556
  • spore formation: no

compound production

@refcompound
8805flavin-adenine dinucleotide
20216Flavin-adenine dinucleotide

murein

  • @ref: 8805
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116556nitrate-reduction17632
116556nitrite-reduction16301

metabolite production

@refmetaboliteproductionChebi-ID
67770flavin adenine dinucleotideyes
116556indoleno35581

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
67770carboxylesterase3.1.1.1
116556oxidase-
116556catalase+1.11.1.6
116556urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116556--++-+--------------

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8805-------------------------+--+---------------------

Isolation, sampling and environmental information

isolation

@refsample type
8805camembert cheese
67770Camembert cheese
116556Food, Cheese, Camembert

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Dairy product
#Host#Fungi

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
88051Risk group (German classification)
1165561Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Brevibacterium linens strain ATCC 9175 16S-23S ribosomal intergenic spacer sequenceU59268408ena1703
20218Brevibacterium linens DSM 20426 16S ribosomal RNA gene, partial sequenceAY017067644ena1703
20218Brevibacterium aurantiacum gene for 16S ribosomal RNAX765661474ena273384

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevibacterium aurantiacum strain ATCC 9175273384.30wgspatric273384
66792Brevibacterium aurantiacum strain NBRC 12171273384.55wgspatric273384
66792Brevibacterium linens DSM 204262563366675draftimg1703
66792Brevibacterium aurantiacum ATCC91752600255379draftimg273384
66792Brevibacterium aurantiacum ATCC 91752855079561draftimg273384
67770Brevibacterium aurantiacum NBRC 12171GCA_006539005contigncbi273384
67770Brevibacterium aurantiacum ATCC 9175GCA_900169065contigncbi273384

GC content

@refGC-content
880560.2
6777062.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno90.583no
gram-positiveyes91.602no
anaerobicno99.566no
halophileyes68.078no
spore-formingno88.822no
glucose-utilyes86.571no
aerobicyes95.475no
flagellatedno97.572no
thermophileno99.307yes
glucose-fermentno93.21no

External links

@ref: 8805

culture collection no.: DSM 20426, ATCC 9175, NCDO 739, NCIB 8546, JCM 2590, BCRC 10379, CCUG 12159, CCUG 23574, CECT 76, CIP 63.12, IAM 1902, IFO 12171, IMET 10996, KCTC 3084, LMG 22546, NBRC 12171, NCIMB 8546, VKM Ac-2111

straininfo link

  • @ref: 71508
  • straininfo: 92599

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Phylogeny15198034[Three new species of brevibacteria--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov].Gavrish EIu, Krauzova VI, Potekhina NV, Karasev SG, Plotnikova EG, Altyntseva OV, Korosteleva LA, Evtushenko LIMikrobiologiia2004Brevibacterium/chemistry/*classification/physiology, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data, Phylogeny, Pigments, Biological, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Russia, Sequence Analysis, *Soil Microbiology, Soil Pollutants, Teichoic Acids/chemistryGenetics
Metabolism15483183Deacidification by Debaryomyces hansenii of smear soft cheeses ripened under controlled conditions: relative humidity and temperature influences.Bonaiti C, Leclercq-Perlat MN, Latrille E, Corrieu GJ Dairy Sci2004Brevibacterium/growth & development/*metabolism, Cheese/analysis/*microbiology/standards, Colony Count, Microbial, Fermentation, Food Handling/methods, Food Microbiology, Food Technology/*methods, Humidity, Hydrogen-Ion Concentration, Rheology, Saccharomycetales/growth & development/*metabolism, Temperature, Time FactorsBiotechnology10.3168/jds.S0022-0302(04)73538-9
Phylogeny19648361Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.Forquin MP, Duvergey H, Proux C, Loux V, Mounier J, Landaud S, Coppee JY, Gibrat JF, Bonnarme P, Martin-Verstraete I, Vallaeys TAppl Environ Microbiol2009Bacterial Typing Techniques/*methods, Base Sequence, Brevibacterium/*classification/genetics/*isolation & purification, Cluster Analysis, Comparative Genomic Hybridization/*methods, DNA Fingerprinting/*methods, Genetic Variation, Genotype, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis/methods, Phylogeny, Sequence Alignment, Sequence Analysis, DNA/*methodsGenetics10.1128/AEM.00224-09
Metabolism21169450Global regulation of the response to sulfur availability in the cheese-related bacterium Brevibacterium aurantiacum.Forquin MP, Hebert A, Roux A, Aubert J, Proux C, Heilier JF, Landaud S, Junot C, Bonnarme P, Martin-Verstraete IAppl Environ Microbiol2010*Brevibacterium/enzymology/genetics/growth & development/metabolism, Carbon-Oxygen Lyases/genetics/metabolism, Carbon-Sulfur Lyases/genetics/metabolism, Cysteine/biosynthesis/metabolism, Cystine/metabolism, Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Homocysteine/biosynthesis, Metabolome, Methionine/biosynthesis/metabolism, Reverse Transcriptase Polymerase Chain Reaction, Sulfur/*metabolismEnzymology10.1128/AEM.01708-10
Enzymology26765252Teichoic, teichulosonic and teichuronic acids in the cell wall of Brevibacterium aurantiacum VKM Ac-2111(capital TE, Cyrillic).Shashkov AS, Potekhina NV, Senchenkova SN, Evtushenko LICarbohydr Res2015Brevibacterium/*chemistry, Cell Wall/*chemistry, Magnetic Resonance Spectroscopy, Molecular Structure, Polysaccharides, Bacterial/chemistry/isolation & purification, Teichoic Acids/chemistry/*isolation & purification, Uronic Acids/chemistry/*isolation & purificationPhylogeny10.1016/j.carres.2015.12.007

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8805Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20426)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20426
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33417Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10017
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
71508Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92599.1StrainInfo: A central database for resolving microbial strain identifiers
116556Curators of the CIPCollection of Institut Pasteur (CIP 63.12)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.12