Strain identifier

BacDive ID: 18154

Type strain: Yes

Species: Solimonas flava

Strain Designation: CW-KD 4

Culture col. no.: DSM 18980, CCTCC AB 206145, KCTC 12881

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General

@ref: 7812

BacDive-ID: 18154

DSM-Number: 18980

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Solimonas flava CW-KD 4 is an aerobe, mesophilic, gram-negative bacterium that was isolated from surface layer of a polluted farmland soil.

strain history: <- Y. Zhou, Nanjing Agric. Univ., China; CW-KD 4 <- Y. Zhou and R. Lai

doi: 10.13145/bacdive18154.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Nevskiales
  • family: Nevskiaceae
  • genus: Solimonas
  • species: Solimonas flava
  • full scientific name: Solimonas flava (Zhou et al. 2008) Sheu et al. 2011
  • synonyms

    • @ref: 20215
    • synonym: Sinobacter flavus

@ref: 7812

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Nevskiaceae

genus: Solimonas

species: Solimonas flava

full scientific name: Solimonas flava (Zhou et al. 2008) Sheu et al. 2011

strain designation: CW-KD 4

type strain: yes

Morphology

cell morphology

  • @ref: 32277
  • gram stain: negative
  • cell length: 2.6 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32277
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7812
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1a.pdf

culture temp

@refgrowthtypetemperaturerange
7812positivegrowth28mesophilic
32277positivegrowth10-35
32277positiveoptimum27.5mesophilic

culture pH

@refabilitytypepH
32277positivegrowth05-08
32277positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32277
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32277
  • spore formation: no

halophily

  • @ref: 32277
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3227717057cellobiose+carbon source
322775417glucosamine+carbon source
3227717234glucose+carbon source
32277506227N-acetylglucosamine+carbon source
3227733942ribose+carbon source
3227717992sucrose+carbon source

enzymes

@refvalueactivityec
32277cytochrome oxidase+1.9.3.1
32277urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 7812
  • sample type: surface layer of a polluted farmland soil
  • geographic location: Jiangsu Province, Nanjing
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Engineered#Contamination
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 7812
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7812
  • description: Solimonas flava DSM 18980 strain CW-KD 4 16S ribosomal RNA gene, partial sequence
  • accession: EF154515
  • length: 1487
  • database: ena
  • NCBI tax ID: 1123257

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Solimonas flava DSM 18980GCA_000426685scaffoldncbi1123257
66792Sinobacter flavus DSM 189801123257.3wgspatric1123257
66792Solimonas flava DSM 189802526164694permanentimg1123257

GC content

  • @ref: 32277
  • GC-content: 65.1

External links

@ref: 7812

culture collection no.: DSM 18980, CCTCC AB 206145, KCTC 12881

straininfo link

@refpassport
20218http://www.straininfo.net/strains/766253
20218http://www.straininfo.net/strains/766252
20218http://www.straininfo.net/strains/766254

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
7812Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18980)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18980
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2851710.1099/ijs.0.65244-0
32277Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28517
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)