Strain identifier
BacDive ID: 18019
Type strain: 
Species: Tissierella praeacuta
Strain history: <- NCIMB <- NCTC <- ATCC <- VPI <- A. Prevot; Prevot 3722B
NCBI tax ID(s): 1123404 (strain), 43131 (species)
version 8.1 (current version)
General
@ref: 7391
BacDive-ID: 18019
DSM-Number: 18095
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile, human pathogen
description: Tissierella praeacuta DSM 18095 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from gangrene.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1123404 | strain |
| 43131 | species |
strain history
- @ref: 7391
- history: <- NCIMB <- NCTC <- ATCC <- VPI <- A. Prevot; Prevot 3722B
doi: 10.13145/bacdive18019.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Tissierellales
- family: Tissierellaceae
- genus: Tissierella
- species: Tissierella praeacuta
- full scientific name: Tissierella praeacuta (Tissier 1908) Collins and Shah 1986
synonyms
@ref synonym 20215 Clostridium hastiforme 20215 Bacteroides praeacutus 20215 Coccobacillus praeacutus
@ref: 7391
domain: Bacteria
phylum: Firmicutes
class: Tissierellia
order: Clostridiales
family: Tissierellaceae
genus: Tissierella
species: Tissierella praeacuta
full scientific name: Tissierella praeacuta (Tissier 1908) Collins and Shah 1986 emend. Alauzet et al. 2014
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.263 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 7391
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7391 | positive | growth | 37 | mesophilic |
| 48970 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 7391 | anaerobe | |
| 48970 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 7391 | gangrene |
| 48970 | Gangrene |
isolation source categories
- Cat1: #Infection
- Cat2: #Inflammation
taxonmaps
- @ref: 69479
- File name: preview.99_7347.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_207;96_3436;97_4218;98_5390;99_7347&stattab=map
- Last taxonomy: Tissierella praeacuta subclade
- 16S sequence: X80833
- Sequence Identity:
- Total samples: 2197
- soil counts: 286
- aquatic counts: 370
- animal counts: 1412
- plant counts: 129
Safety information
risk assessment
- @ref: 7391
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Tissierella praeacuta strain ATCC 25539 16S ribosomal RNA gene, partial sequence | DQ911277 | 319 | ena | 43131 |
| 20218 | Tissierella praeacuta 16S rRNA gene, type strain ATCC 25539T | X80833 | 1475 | ena | 43131 |
| 7391 | Tissierella praeacuta 16S rRNA gene, type strain NCTC 11158T | X80832 | 1410 | ena | 43131 |
| 7391 | Tissierella praeacuta strain ATCC 25539 16S ribosomal RNA gene, partial sequence | GQ461812 | 1415 | ena | 43131 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tissierella praeacuta NCTC11158 | GCA_900460335 | contig | ncbi | 43131 |
| 66792 | Tissierella praeacuta DSM 18095 | GCA_900128955 | scaffold | ncbi | 1123404 |
| 66792 | Tissierella praeacuta DSM 18095 | 1123404.4 | wgs | patric | 1123404 |
| 66792 | Tissierella praeacuta strain NCTC11158 | 43131.3 | wgs | patric | 43131 |
| 66792 | Tissierella praeacuta NCTC 11158 | 2832346034 | draft | img | 43131 |
| 66792 | Tissierella praeacuta DSM 18095 | 2582581260 | draft | img | 1123404 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 83.715 | no |
| flagellated | no | 78.822 | no |
| gram-positive | yes | 78.314 | no |
| anaerobic | yes | 98.403 | yes |
| aerobic | no | 97.268 | yes |
| halophile | no | 82.681 | no |
| spore-forming | yes | 90.146 | no |
| glucose-ferment | no | 56.459 | no |
| thermophile | no | 93.72 | yes |
| glucose-util | yes | 75.38 | no |
External links
@ref: 7391
culture collection no.: DSM 18095, ATCC 25539, NCIMB 703038, NCTC 11158, VPI 0563, CCUG 27825, Prevot 3722B
straininfo link
- @ref: 87008
- straininfo: 5031
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15143047 | Clostridium hastiforme is a later synonym of Tissierella praeacuta. | Bae JW, Park JR, Chang YH, Rhee SK, Kim BC, Park YH | Int J Syst Evol Microbiol | 10.1099/ijs.0.63068-0 | 2004 | Clostridium/*classification/genetics/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Nucleic Acid Hybridization, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as Topic | Phenotype |
| Phylogeny | 36149539 | Draft genomes and descriptions of Urmitella timonensis gen. nov., sp. nov. and Marasmitruncus massiliensis gen. nov., sp. nov., isolated from severely malnourished African children using culturomics. | Bellali S, Haddad G, Pham TP, Iwaza R, Ibrahim A, Armstrong N, Fadlane A, Couderc C, Diallo A, Sokhna C, Million M, Raoult D, Tidjani Alou M | Antonie Van Leeuwenhoek | 10.1007/s10482-022-01777-x | 2022 | Humans, Child, Female, *RNA, Ribosomal, 16S/genetics, DNA, Bacterial/genetics, Phylogeny | Pathogenicity |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7391 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18095) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18095 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 48970 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 27825) | https://www.ccug.se/strain?id=27825 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 87008 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID5031.1 | StrainInfo: A central database for resolving microbial strain identifiers |