Name: Tissierella praeacuta DSM 18095
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18019

Type strain:

Species: Tissierella praeacuta

Culture col. no.: DSM 18095, ATCC 25539, NCIMB 703038, NCTC 11158, VPI 0563, CCUG 27825, Prevot 3722B

Strain history: <- NCIMB <- NCTC <- ATCC <- VPI <- A. Prevot; Prevot 3722B

NCBI tax ID(s): 1123404 (strain), 43131 (species)

SI-ID 5031

LMG 8203, ATCC 25539, NCTC 11158, CCUG 27825, NCIMB 703038, NCFB3038, KCTC 5024, DSM 18095

Other strains from Tissierella praeacuta

T. praeacuta BL 4858, CCUG 21837, KCTC 5022, ...
T. praeacuta CCUG 58789
T. praeacuta CCUG 67192
T. praeacuta CCUG 68619
T. praeacuta CCUG 69324

Section

Tissierella praeacuta DSM 18095 is an anaerobe, spore-forming, mesophilic human pathogen that was isolated from gangrene.

motile
spore-forming
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Tissierellales*
	Family	*Tissierellaceae*
	Genus	*Tissierella*
	Species	**Tissierella praeacuta**
	Full Scientific Name (LPSN)	Tissierella praeacuta (Tissier 1908) Collins and Shah 1986

	Synonym	Clostridium hastiforme
	Synonym	Bacteroides praeacutus
	Synonym	"Coccobacillus* praeacutus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %92.263

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7391]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #7391]

Culture medium growth

[Ref.: #7391]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7391]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7391]			growth	37 °C
[Ref.: #48970]			growth	37 °C

[Ref.: #7391]	Temperature range	mesophilic
[Ref.: #48970]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7391]	Oxygen tolerance	anaerobe
[Ref.: #48970]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	90.91	20 of 22
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	pyrimidine metabolism	86.67	39 of 45
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	oxidative phosphorylation	63.74	58 of 91
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	glutamate and glutamine metabolism	53.57	15 of 28
[Ref.: #66794]	glycolysis	52.94	9 of 17
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	lipid metabolism	48.39	15 of 31
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	valine metabolism	44.44	4 of 9
[Ref.: #66794]	allantoin degradation	44.44	4 of 9
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	isoprenoid biosynthesis	42.31	11 of 26
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	starch degradation	40	4 of 10
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	degradation of pentoses	39.29	11 of 28
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	leucine metabolism	38.46	5 of 13
[Ref.: #66794]	arginine metabolism	37.5	9 of 24
[Ref.: #66794]	proline metabolism	36.36	4 of 11
[Ref.: #66794]	tetrahydrofolate metabolism	35.71	5 of 14
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	d-mannose degradation	33.33	3 of 9
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	L-lactaldehyde degradation	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	degradation of sugar acids	24	6 of 25
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7391]	Sample type/isolated from	gangrene

[Ref.: #48970]	Sample type/isolated from	Gangrene
* marker position based on {}

Isolation sources categories

#Infection

#Inflammation

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X80833 (>99% sequence identity) for Tissierella praeacuta subclade from Microbeatlas

Aquatic Samples	370
Soil Samples	286
Animal Samples	1412
Plant Samples	129
Total Samples	2197

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7391]	Pathogenicity (human)	yes
[Ref.: #7391]	Pathogenicity (animal)	yes
[Ref.: #7391]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7391]	Tissierella praeacuta 16S rRNA gene, type strain NCTC 11158T	X80832	1410	ENA	43131 tax ID
[Ref.: #7391]	Tissierella praeacuta strain ATCC 25539 16S ribosomal RNA gene, partial sequence	GQ461812	1415	ENA	43131 tax ID
[Ref.: #20218]	Tissierella praeacuta 16S rRNA gene, type strain ATCC 25539T	X80833	1475	ENA	43131 tax ID	*
[Ref.: #20218]	Tissierella praeacuta strain ATCC 25539 16S ribosomal RNA gene, partial sequence	DQ911277	319	ENA	43131 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tissierella praeacuta NCTC11158	GCA_900460335	contig	GenBank	43131 tax ID	*
[Ref.: #66792]	Tissierella praeacuta DSM 18095	GCA_900128955	scaffold	GenBank	1123404 tax ID	*
[Ref.: #66792]	Tissierella praeacuta DSM 18095	1123404.4	wgs	PATRIC	1123404 tax ID	*
[Ref.: #66792]	Tissierella praeacuta strain NCTC11158	43131.3	wgs	PATRIC	43131 tax ID	*
[Ref.: #66792]	Tissierella praeacuta NCTC 11158	2832346034	draft	JGI IMG/M	43131 tax ID	*
[Ref.: #66792]	Tissierella praeacuta DSM 18095	2582581260	draft	JGI IMG/M	1123404 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tissierella praeacuta DSM 18095 DSM 18095 NCBI: GCA_900128955.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tissierella praeacuta DSM 18095 DSM 18095 NCBI: GCA_900128955.1
[Ref.: #69480]	motile	yes	83.715	no
[Ref.: #69480]	flagellated	no	78.822	no
[Ref.: #69480]	gram-positive	yes	78.314	no
[Ref.: #69480]	anaerobic	yes	98.403	yes
[Ref.: #69480]	aerobic	no	97.268	yes
[Ref.: #69480]	halophile	no	82.681	no
[Ref.: #69480]	spore-forming	yes	90.146	no
[Ref.: #69480]	glucose-ferment	no	56.459	no
[Ref.: #69480]	thermophile	no	93.72	yes
[Ref.: #69480]	glucose-util	yes	75.38	no

Availability in culture collections External links

[Ref.: #7391]

Culture collection no.

DSM 18095, ATCC 25539, NCIMB 703038, NCTC 11158, VPI 0563, CCUG 27825, Prevot 3722B

[Ref.: #87008]

SI-ID 5031

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium hastiforme is a later synonym of Tissierella praeacuta.	Bae JW, Park JR, Chang YH, Rhee SK, Kim BC, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.63068-0	2004	*
Phylogeny	Draft genomes and descriptions of Urmitella timonensis gen. nov., sp. nov. and Marasmitruncus massiliensis gen. nov., sp. nov., isolated from severely malnourished African children using culturomics.	Bellali S, Haddad G, Pham TP, Iwaza R, Ibrahim A, Armstrong N, Fadlane A, Couderc C, Diallo A, Sokhna C, Million M, Raoult D, Tidjani Alou M	Antonie Van Leeuwenhoek	10.1007/s10482-022-01777-x	2022	*

References

#7391

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18095

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#48970 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27825

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87008

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5031.1 )

* These data were automatically processed and therefore are not curated

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Tissierella praeacuta DSM 18095 DSM 18095

Tissierella praeacuta DSM 18095 DSM 18095

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