Strain identifier

BacDive ID: 17986

Type strain: Yes

Species: Finegoldia magna

Strain Designation: 2974

Strain history: <- CCUG <- E Yabuuchi,Gifu,Japan 28 May 1985 <- ATCC <- AR Prevot, 2974, `Diplococcus magnus` <- Tissier and Martelly

NCBI tax ID(s): 1260 (species)

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General

@ref: 8841

BacDive-ID: 17986

DSM-Number: 20470

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, coccus-shaped

description: Finegoldia magna 2974 is an anaerobe, mesophilic, coccus-shaped bacterium of the family Peptoniphilaceae.

NCBI tax id

  • NCBI tax id: 1260
  • Matching level: species

strain history

@refhistory
8841<- ATCC; ATCC 15794 <- A. R. Prevot; 2974 (Diplococcus magnus) <- H. Tissier;
67770DSM 20470 <-- ATCC 15794 <-- A. R. Prévot 2974 <-- Tissier and Martelly.
67771<- CCUG <- E Yabuuchi,Gifu,Japan 28 May 1985 <- ATCC <- AR Prevot, 2974, `Diplococcus magnus` <- Tissier and Martelly

doi: 10.13145/bacdive17986.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Finegoldia
  • species: Finegoldia magna
  • full scientific name: Finegoldia magna (Prévot 1933) Murdoch and Shah 2000

  • synonyms

    @refsynonym
    20215Diplococcus magnus
    20215Peptostreptococcus magnus
    20215Peptococcus magnus

@ref: 8841

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Finegoldia

species: Finegoldia magna

full scientific name: Finegoldia magna (Prévot 1933) Murdoch and Shah 2000

strain designation: 2974

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771coccus-shapedno
67771pleomorphic-shaped
67771positive

colony morphology

  • @ref: 46640
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8841PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
8841COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

@refgrowthtypetemperaturerange
8841positivegrowth37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8841anaerobe
46640anaerobe
67771anaerobe

spore formation

  • @ref: 67771
  • spore formation: no

murein

  • @ref: 8841
  • murein short key: A12.01
  • type: A3alpha' L-Lys-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase+3.4.11.1
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8841-+--------------+-+/-+/-+++++++-+
8841-+--------------++-+-+++++-+-

Isolation, sampling and environmental information

isolation

@refsample type
67770
67771From cystitis
8841unknown source of isolation

taxonmaps

  • @ref: 69479
  • File name: preview.99_1256.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_210;96_728;97_851;98_992;99_1256&stattab=map
  • Last taxonomy: Finegoldia magna subclade
  • 16S sequence: AB640691
  • Sequence Identity:
  • Total samples: 108576
  • soil counts: 2103
  • aquatic counts: 3898
  • animal counts: 101814
  • plant counts: 761

Safety information

risk assessment

  • @ref: 8841
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8841Finegoldia magna gene for 16S ribosomal RNA, partial sequenceD141491365ena1260
67770Finegoldia magna gene for 16S ribosomal RNA, partial sequence, strain: JCM 1766AB6406911483ena1260
67770Finegoldia magna strain CCUG 17636 16S ribosomal RNA gene, partial sequenceAF5422271409ena1260

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Peptoniphilaceae bacterium DSM20470GCA_910589735contigncbi1891242
66792Finegoldia magna DSM 20470GCA_003182075scaffoldncbi1260
66792Finegoldia magna strain DSM 204701260.23wgspatric1260
66792Peptoniphilaceae bacterium strain DSM204701891242.11wgspatric1891242
66792Peptoniphilaceae bacterium strain RUMC11891242.10wgspatric1891242
66792Peptoniphilaceae bacterium strain RUMC21891242.9wgspatric1891242
66792Finegoldia magna DSM 204702770939564draftimg1260

GC content

@refGC-contentmethod
884132.0
6777032thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.617yes
gram-positiveyes95.305no
anaerobicyes99.488yes
halophileno68.357no
spore-formingno87.147yes
glucose-utilyes81.252no
aerobicno98.597yes
thermophileno96.042yes
motileno92.959yes
glucose-fermentyes68.308no

External links

@ref: 8841

culture collection no.: DSM 20470, ATCC 15794, CCUG 17636, NCTC 11804, KCTC 15020, JCM 1766, ATCC 14904, GIFU 7629, KCTC 5154, LMG 22735

straininfo link

  • @ref: 86973
  • straininfo: 92829

literature

  • topic: Pathogenicity
  • Pubmed-ID: 22247408
  • title: An in vitro comparison of two silver-containing antimicrobial wound dressings .
  • authors: Hooper SJ, Williams DW, Thomas DW, Hill KE, Percival SL
  • journal: Ostomy Wound Manage
  • year: 2012
  • mesh: Anti-Infective Agents/pharmacology/*therapeutic use, *Bandages, Humans, In Vitro Techniques, Microscopy, Confocal, Silver/pharmacology/*therapeutic use, Wound Healing/*drug effects

Reference

@idauthorscataloguedoi/urltitle
8841Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20470)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20470
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
46640Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 17636)https://www.ccug.se/strain?id=17636
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86973Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92829.1StrainInfo: A central database for resolving microbial strain identifiers