Strain identifier

BacDive ID: 17967

Type strain: Yes

Species: Anaerococcus prevotii

Strain Designation: PC 1, 10107

Strain history: CIP <- 1999, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10107 <- DSM <- ATCC <- M. Pittman, strain PC 1, Staphylococcus aerogenes

NCBI tax ID(s): 525919 (strain), 33034 (species)

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General

@ref: 8776

BacDive-ID: 17967

DSM-Number: 20548

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-positive

description: Anaerococcus prevotii PC 1 is an anaerobe, Gram-positive bacterium that was isolated from human plasma.

NCBI tax id

NCBI tax idMatching level
33034species
525919strain

strain history

@refhistory
8776<- ATCC <- M. Pittman, PC 1 (Staphylococcus aerogenes)
67770Y. Benno <-- T. Mitsuoka <-- ATCC 9321 <-- M. Pittman PC1.
121952CIP <- 1999, J.P. Carlier, Inst. Pasteur, Paris, France: strain 10107 <- DSM <- ATCC <- M. Pittman, strain PC 1, Staphylococcus aerogenes

doi: 10.13145/bacdive17967.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Anaerococcus
  • species: Anaerococcus prevotii
  • full scientific name: Anaerococcus prevotii (Foubert and Douglas 1948) Ezaki et al. 2001

  • synonyms

    @refsynonym
    20215Micrococcus prevotii
    20215Peptococcus prevotii
    20215Peptostreptococcus prevotii

@ref: 8776

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Anaerococcus

species: Anaerococcus prevotii

full scientific name: Anaerococcus prevotii (Foubert and Douglas 1948) Ezaki et al. 2001

strain designation: PC 1, 10107

type strain: yes

Morphology

cell morphology

  • @ref: 121952
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 121952

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_20548_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8776PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
38589MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
121952CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20
121952CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
8776positivegrowth37
38589positivegrowth37
67770positivegrowth37
121952positivegrowth37

Physiology and metabolism

oxygen tolerance

  • @ref: 8776
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 96

murein

  • @ref: 8776
  • murein short key: A12.02
  • type: A4alpha' L-Lys-D-Glu

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12195217108D-arabinose-degradation
12195215824D-fructose-degradation
12195217634D-glucose-degradation
12195265327D-xylose-degradation
12195217057cellobiose-degradation
12195217716lactose-degradation
12195217306maltose-degradation
12195217814salicin-degradation
12195217992sucrose-degradation
1219524853esculin-hydrolysis
121952606565hippurate+hydrolysis
12195217632nitrate-reduction
12195216301nitrite-reduction
6838016199urea+hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
12195235581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6838035581indole-
12195215688acetoin-

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease+3.5.1.5
121952oxidase-
121952beta-galactosidase+3.2.1.23
121952alcohol dehydrogenase-1.1.1.1
121952catalase+1.11.1.6
121952gamma-glutamyltransferase+2.3.2.2
121952lysine decarboxylase-4.1.1.18
121952ornithine decarboxylase-4.1.1.17
121952urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121952------+-------++----

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8776+-+--+--+--------+/----+/-++--+/--+/-

Isolation, sampling and environmental information

isolation

@refsample type
8776human plasma
67770Human clinical specimen
121952Human, Plasma

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_1669.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_172;96_952;97_1110;98_1321;99_1669&stattab=map
  • Last taxonomy: Anaerococcus prevotii
  • 16S sequence: AF542232
  • Sequence Identity:
  • Total samples: 9865
  • soil counts: 68
  • aquatic counts: 212
  • animal counts: 9481
  • plant counts: 104

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
87762Risk group (German classification)
1219521Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8776Anaerococcus prevotii gene for 16S ribosomal RNA, partial sequence, isolate: GIFU 7658D141391375nuccore525919
67770Anaerococcus prevotii gene for 16S ribosomal RNA, partial sequence, strain: JCM 6508AB9718071488nuccore33034
67770Anaerococcus prevotii strain CCUG 41932 16S ribosomal RNA gene, partial sequenceAF5422321381nuccore525919

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerococcus prevotii DSM 20548GCA_000024105completencbi525919
66792Anaerococcus prevotii strain NCTC1180633034.3wgspatric33034
66792Anaerococcus prevotii PC 1, DSM 20548644736326completeimg525919
66792Anaerococcus prevotii NCTC 118062808606805draftimg33034
67770Anaerococcus prevotii NCTC11806GCA_900445285contigncbi33034

GC content

@refGC-contentmethod
877633.0
6777029-33high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno96no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes85.223no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes88.367yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no95.922yes
69480spore-formingspore-formingAbility to form endo- or exosporesno75.829no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.375yes
69480flagellatedmotile2+Ability to perform flagellated movementno89.479no

External links

@ref: 8776

culture collection no.: DSM 20548, ATCC 9321, JCM 6508, CCUG 41932, CIP 105881, NCTC 11806

straininfo link

  • @ref: 86954
  • straininfo: 46461

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8776Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20548)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20548
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38589Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17949
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86954Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46461.1StrainInfo: A central database for resolving microbial strain identifiers
121952Curators of the CIPCollection of Institut Pasteur (CIP 105881)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105881