Strain identifier
BacDive ID: 17967
Type strain:
Species: Anaerococcus prevotii
Strain Designation: PC 1
Strain history: Y. Benno <-- T. Mitsuoka <-- ATCC 9321 <-- M. Pittman PC1.
NCBI tax ID(s): 525919 (strain), 33034 (species)
General
@ref: 8776
BacDive-ID: 17967
DSM-Number: 20548
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Anaerococcus prevotii PC 1 is an anaerobe, mesophilic bacterium that was isolated from human plasma.
NCBI tax id
NCBI tax id | Matching level |
---|---|
33034 | species |
525919 | strain |
strain history
doi: 10.13145/bacdive17967.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptoniphilaceae
- genus: Anaerococcus
- species: Anaerococcus prevotii
- full scientific name: Anaerococcus prevotii (Foubert and Douglas 1948) Ezaki et al. 2001
synonyms
@ref synonym 20215 Peptococcus prevotii 20215 Peptostreptococcus prevotii 20215 Micrococcus prevotii
@ref: 8776
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptoniphilaceae
genus: Anaerococcus
species: Anaerococcus prevotii
full scientific name: Anaerococcus prevotii (Foubert and Douglas 1948) Ezaki et al. 2001
strain designation: PC 1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 94.945
multimedia
- @ref: 66793
- multimedia content: EM_DSM_20548_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8776 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
38589 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8776 | positive | growth | 37 | mesophilic |
38589 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
8776 | anaerobe | |
69480 | anaerobe | 99.276 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.699
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 94.748
murein
- @ref: 8776
- murein short key: A12.02
- type: A4alpha' L-Lys-D-Glu
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 27897 | tryptophan | - | energy source |
68380 | 17632 | nitrate | - | reduction |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16199 | urea | + | hydrolysis |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | glutamyl-glutamate arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | + | |
68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | + | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | + | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | + | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8776 | + | - | + | - | - | + | - | - | + | - | - | - | - | - | - | - | - | +/- | - | - | - | +/- | + | + | - | - | +/- | - | +/- |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8776 | human plasma |
67770 | Human clinical specimen |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_1669.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_172;96_952;97_1110;98_1321;99_1669&stattab=map
- Last taxonomy: Anaerococcus prevotii
- 16S sequence: AF542232
- Sequence Identity:
- Total samples: 9865
- soil counts: 68
- aquatic counts: 212
- animal counts: 9481
- plant counts: 104
Safety information
risk assessment
- @ref: 8776
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
8776 | Anaerococcus prevotii gene for 16S ribosomal RNA, partial sequence, isolate: GIFU 7658 | D14139 | 1375 | ena | 525919 |
67770 | Anaerococcus prevotii gene for 16S ribosomal RNA, partial sequence, strain: JCM 6508 | AB971807 | 1488 | ena | 33034 |
67770 | Anaerococcus prevotii strain CCUG 41932 16S ribosomal RNA gene, partial sequence | AF542232 | 1381 | ena | 525919 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Anaerococcus prevotii DSM 20548 DSM 20548 | GCA_000024105 | complete | ncbi | 525919 |
66792 | Anaerococcus prevotii strain NCTC11806 | 33034.3 | wgs | patric | 33034 |
66792 | Anaerococcus prevotii PC 1, DSM 20548 | 644736326 | complete | img | 525919 |
66792 | Anaerococcus prevotii NCTC 11806 | 2808606805 | draft | img | 33034 |
67770 | Anaerococcus prevotii DSM 20548, complete genome | CP001708 | ena | 525919 | |
67770 | Anaerococcus prevotii NCTC11806 | GCA_900445285 | contig | ncbi | 33034 |
66792 | Scytonema hyalinum WJT4-NPBG1 WJT4-NPBG1 | GCA_019359075 | contig | patric | 1939789 |
GC content
@ref | GC-content | method |
---|---|---|
8776 | 33.0 | |
67770 | 29-33 | high performance liquid chromatography (HPLC) |
External links
@ref: 8776
culture collection no.: DSM 20548, ATCC 9321, JCM 6508, CCUG 41932, CIP 105881, NCTC 11806
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/94945 |
20218 | http://www.straininfo.net/strains/94942 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8776 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20548) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20548 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38589 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17949 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68380 | Automatically annotated from API rID32A | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |