Strain identifier
BacDive ID: 17775
Type strain: 
Species: Dethiosulfovibrio salsuginis
Strain history: <- B. K. C. Patel, Griffith Univ., Nathan Campus; USBA 82 <- C. Diaz-Cardenas et al.
NCBI tax ID(s): 561720 (species)
version 8.1 (current version)
General
@ref: 15664
BacDive-ID: 17775
DSM-Number: 21565
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Dethiosulfovibrio salsuginis DSM 21565 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from terrestrial saline spring, 2500 m above sea level.
NCBI tax id
- NCBI tax id: 561720
- Matching level: species
strain history
- @ref: 15664
- history: <- B. K. C. Patel, Griffith Univ., Nathan Campus; USBA 82 <- C. Diaz-Cardenas et al.
doi: 10.13145/bacdive17775.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/synergistota
- domain: Bacteria
- phylum: Synergistota
- class: Synergistia
- order: Synergistales
- family: Dethiosulfovibrionaceae
- genus: Dethiosulfovibrio
- species: Dethiosulfovibrio salsuginis
- full scientific name: Dethiosulfovibrio salsuginis Díaz-Cárdenas et al. 2010
@ref: 15664
domain: Bacteria
phylum: Synergistetes
class: Synergistia
order: Synergistales
family: Synergistaceae
genus: Dethiosulfovibrio
species: Dethiosulfovibrio salsuginis
full scientific name: Dethiosulfovibrio salsuginis Díaz-Cárdenas et al. 2010
type strain: yes
Morphology
cell morphology
- @ref: 29319
- gram stain: negative
- cell length: 6 µm
- cell width: 1.5 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 15664
- name: DETHIOSULFOVIBRIO MEDIUM (DSMZ Medium 906)
- growth: yes
- link: https://mediadive.dsmz.de/medium/906
- composition: Name: DETHIOSULFOVIBRIO MEDIUM (DSMZ Medium 906) Composition: NaCl 19.98 g/l Yeast extract 4.99501 g/l MgCl2 x 6 H2O 2.997 g/l Na3-citrate x 5 H2O 2.997 g/l Na2S2O3 x 5 H2O 2.4975 g/l Peptone 1.998 g/l KH2PO4 0.999001 g/l Na2S x 9 H2O 0.499501 g/l CaCl2 x 2 H2O 0.1998 g/l HCl 0.0024975 g/l FeCl2 x 4 H2O 0.0014985 g/l Sodium resazurin 0.0004995 g/l CoCl2 x 6 H2O 0.00018981 g/l MnCl2 x 4 H2O 9.99001e-05 g/l ZnCl2 6.99301e-05 g/l Na2MoO4 x 2 H2O 3.5964e-05 g/l NiCl2 x 6 H2O 2.3976e-05 g/l H3BO3 5.99401e-06 g/l CuCl2 x 2 H2O 1.998e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15664 | positive | growth | 30 | mesophilic |
| 29319 | positive | growth | 20-40 | |
| 29319 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29319 | positive | growth | 5.5-8.5 | alkaliphile |
| 29319 | positive | optimum | 7.3 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 15664 | anaerobe |
| 29319 | anaerobe |
spore formation
- @ref: 29319
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29319 | NaCl | positive | growth | 0.1-7 % |
| 29319 | NaCl | positive | optimum | 2 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29319 | 29016 | arginine | + | carbon source |
| 29319 | 16947 | citrate | + | carbon source |
| 29319 | 29987 | glutamate | + | carbon source |
| 29319 | 15361 | pyruvate | + | carbon source |
| 29319 | 26986 | threonine | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 15664
- sample type: terrestrial saline spring, 2500 m above sea level
- geographic location: Andean region at 2500 m above sea level, Salpa spring
- country: Colombia
- origin.country: COL
- continent: Middle and South America
- latitude: 4.3877
- longitude: -74.3475
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Environmental | #Terrestrial | |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_3025.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_366;96_1589;97_1896;98_2328;99_3025&stattab=map
- Last taxonomy: Dethiosulfovibrio salsuginis subclade
- 16S sequence: EU719657
- Sequence Identity:
- Total samples: 1683
- soil counts: 150
- aquatic counts: 1123
- animal counts: 368
- plant counts: 42
Safety information
risk assessment
- @ref: 15664
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15664
- description: Dethiosulfovibrio salsuginis strain USBA 82 16S ribosomal RNA gene, partial sequence
- accession: EU719657
- length: 1388
- database: ena
- NCBI tax ID: 561720
GC content
| @ref | GC-content | method |
|---|---|---|
| 15664 | 52 | thermal denaturation, midpoint method (Tm) |
| 29319 | 52 |
External links
@ref: 15664
culture collection no.: DSM 21565, KCTC 5659, USBA 82
straininfo link
- @ref: 86766
- straininfo: 397020
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19661517 | Dethiosulfovibrio salsuginis sp. nov., an anaerobic, slightly halophilic bacterium isolated from a saline spring. | Diaz-Cardenas C, Lopez G, Patel BKC, Baena S | Int J Syst Evol Microbiol | 10.1099/ijs.0.010835-0 | 2009 | Bacteria, Anaerobic/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Colombia, DNA, Ribosomal/analysis/genetics, Fresh Water/*microbiology, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Species Specificity | Genetics |
| Genetics | 29276571 | Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565(T) an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring. | Diaz-Cardenas C, Lopez G, Alzate-Ocampo JD, Gonzalez LN, Shapiro N, Woyke T, Kyrpides NC, Restrepo S, Baena S | Stand Genomic Sci | 10.1186/s40793-017-0303-x | 2017 |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 15664 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21565) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21565 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29319 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25731 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86766 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397020.1 | StrainInfo: A central database for resolving microbial strain identifiers |