Strain identifier

BacDive ID: 17716

Type strain: Yes

Species: Belliella baltica

Strain Designation: BA134, BA 134T

Strain history: CIP <- 2003, I. Brettar, GBF, Braunschweig, Germany: strain BA 134T <- Formely : Bellia baltica

NCBI tax ID(s): 866536 (strain), 232259 (species)

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General

@ref: 6137

BacDive-ID: 17716

DSM-Number: 15883

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Belliella baltica BA134 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from water sample, 5m depth.

NCBI tax id

NCBI tax idMatching level
232259species
866536strain

strain history

@refhistory
6137<- I. Brettar, GBF; BA134 <- I. Brettar
67772I. Brettar, GBF; BA134 <- I. Brettar
116719CIP <- 2003, I. Brettar, GBF, Braunschweig, Germany: strain BA 134T <- Formely : Bellia baltica

doi: 10.13145/bacdive17716.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Belliella
  • species: Belliella baltica
  • full scientific name: Belliella baltica Brettar et al. 2004

@ref: 6137

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Belliella

species: Belliella baltica

full scientific name: Belliella baltica Brettar et al. 2004 emend. Hahnke et al. 2016

strain designation: BA134, BA 134T

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29964negative0.9-3.0 µm0.3-0.5 µmrod-shaped
26333negative0.9-3 µm0.3-0.5 µmrod-shapedno
69480negative99.965
116719negativerod-shapedno

colony morphology

@refcolony colorcolony shapeincubation periodmedium used
26333pink and transparentcircular0-14 days1/2 Marine agar 2216 (Difco)
26333orange opaque>14 days1/2 marine agar (Difco)
116719

pigmentation

@refproductioncolorname
29964yes
26333yesyellow-redcarotinoids
26333noflexirubin-type

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_15883_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6137HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)yeshttps://mediadive.dsmz.de/medium/514aName: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a) Composition: Agar 15.0 g/l NaCl 9.725 g/l MgCl2 2.95 g/l Bacto peptone 2.5 g/l Na2SO4 1.62 g/l CaCl2 0.9 g/l Yeast extract 0.5 g/l KCl 0.275 g/l NaHCO3 0.08 g/l Fe(III) citrate 0.05 g/l KBr 0.04 g/l SrCl2 0.017 g/l H3BO3 0.011 g/l Na2HPO4 0.004 g/l Na-silicate 0.002 g/l NaF 0.0012 g/l (NH4)NO3 0.0008 g/l Distilled water
33871Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
263331/2 Marine agar 2216 (Difco)yes
263331/2 marine agar (Difco)yes
26333ZoBell agaryes
26333Marine broth 2216 (Difco)yes
116719CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6137positivegrowth28mesophilic
29964positivegrowth04-37
29964positiveoptimum25mesophilic
33871positivegrowth30mesophilic
26333positiveoptimum25mesophilic
26333positivegrowth4-37
67772positiveminimum4psychrophilic
67772positiveoptimum25mesophilic
67772positivemaximum37mesophilic
116719positivegrowth15-41
116719nogrowth5psychrophilic

culture pH

@refabilitytypepHPH range
29964positivegrowth06-10alkaliphile
29964positiveoptimum7
26333positivegrowth6-10
26333positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29964aerobe
116719obligate aerobe

spore formation

@refspore formationconfidence
69481no91
69480no99.831

halophily

@refsaltgrowthtested relationconcentration
29964NaClpositivegrowth0-3 %
29964NaClpositiveoptimum0-6 %
26333NaClpositivegrowth0-6 %
26333NaClpositiveoptimum0-3 %
116719NaClnogrowth0 %
116719NaClnogrowth2 %
116719NaClnogrowth4 %
116719NaClnogrowth6 %
116719NaClnogrowth8 %
116719NaClnogrowth10 %

observation

@refobservation
29964aggregates in clumps
26333growth on 0.5% yeast extract

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2996422599arabinose+carbon source
2996417057cellobiose+carbon source
2996428757fructose+carbon source
2996428260galactose+carbon source
2996417234glucose+carbon source
2996417716lactose+carbon source
2996417306maltose+carbon source
2996428053melibiose+carbon source
2996416634raffinose+carbon source
2996417814salicin+carbon source
2996417992sucrose+carbon source
2996427082trehalose+carbon source
2996418222xylose+carbon source
2996417632nitrate+reduction
26333167632-oxobutanoate+assimilation
26333309162-oxoglutarate+assimilation
26333286442-oxopentanoate+assimilation
2633330089acetate+assimilation
2633317925alpha-D-glucose+assimilation
2633336219alpha-lactose+assimilation
2633322599arabinose+assimilation
26333casein-growth
2633317057cellobiose+builds acid from
2633362968cellulose-hydrolysis
2633317029chitin-growth
2633315824D-fructose+builds acid from
2633312936D-galactose+assimilation
2633317634D-glucose+builds acid from
2633316634raffinose+builds acid from
2633316551D-trehalose+assimilation
2633365327D-xylose+builds acid from
2633316991dna+hydrolysis
263334853esculin+hydrolysis
263334853esculin+builds acid from
2633328260galactose+builds acid from
263335291gelatin-hydrolysis
2633328066gentiobiose+assimilation
2633317234glucose+assimilation
2633330849L-arabinose+builds acid from
2633329985L-glutamate+assimilation
2633317716lactose+builds acid from
263336359lactulose+assimilation
2633317306maltose+builds acid from
2633317306maltose+assimilation
2633328053melibiose+builds acid from
2633317309pectin-growth
2633317814salicin+builds acid from
2633328017starch+hydrolysis
2633328017starch+builds acid from
2633317992sucrose+builds acid from
2633327082trehalose+builds acid from
2633327897tryptophan-hydrolysis
2633318186tyrosine-hydrolysis
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837117151xylitol-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837116988D-ribose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
1167194853esculin+hydrolysis
11671917632nitrate+reduction
11671916301nitrite-reduction

metabolite production

  • @ref: 116719
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11671915688acetoin-
11671917234glucose-

enzymes

@refvalueactivityec
29964catalase+1.11.1.6
29964cytochrome oxidase+1.9.3.1
26333cytochrome oxidase+1.9.3.1
26333catalase+1.11.1.6
26333nitrate reductase+1.7.99.4
26333alpha-glucosidase+3.2.1.20
26333beta-glucosidase+3.2.1.21
26333beta-galactosidase+3.2.1.23
26333acid phosphatase+3.1.3.2
26333alkaline phosphatase+3.1.3.1
26333lipase+
26333leucine arylamidase+3.4.11.1
26333valine arylamidase+
26333cystine arylamidase+3.4.11.3
26333trypsin+3.4.21.4
26333chymotrypsin+3.4.4.5
26333naphthol-AS-BI-phosphohydrolase+
116719oxidase+
116719beta-galactosidase+3.2.1.23
116719alcohol dehydrogenase-1.1.1.1
116719gelatinase-
116719amylase+
116719caseinase-3.4.21.50
116719catalase+1.11.1.6
116719tween esterase+
116719gamma-glutamyltransferase+2.3.2.2
116719lecithinase-
116719lipase-
116719lysine decarboxylase-4.1.1.18
116719ornithine decarboxylase-4.1.1.17
116719phenylalanine ammonia-lyase-4.3.1.24
116719tryptophan deaminase-
116719urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116719-+++-+++++++---+-+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116719---+/--+/----+/-+/-+/------------+/-+/-+/-+/-+/-+/-+/-+/-+/---+/-+/-+/--+/-+/---------+/-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116719------------------+--------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationsampling datecountryorigin.countrycontinent
6137water sample, 5m depthcentral Baltic Sea
26333Surface waterBaltic Sea1998-09
67772Water sample, 5m depth2003PortugalPRTEurope
116719Environment, Water samplecentralBaltic Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_4899.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15774;96_2410;97_2933;98_3667;99_4899&stattab=map
  • Last taxonomy: Belliella baltica
  • 16S sequence: AJ564643
  • Sequence Identity:
  • Total samples: 321
  • soil counts: 75
  • aquatic counts: 208
  • animal counts: 34
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61371Risk group (German classification)
677721
1167191Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6137
  • description: Bellia baltica 16S rRNA gene, strain BA134 T
  • accession: AJ564643
  • length: 1445
  • database: ena
  • NCBI tax ID: 866536

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Belliella baltica DSM 15883GCA_000265405completencbi866536
66792Belliella baltica DSM 15883866536.3completepatric866536
66792Belliella baltica DSM 158832509276058completeimg866536

GC content

@refGC-contentmethod
613735.4
2633335.4high performance liquid chromatography (HPLC)
613736.8sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno91no
motileno91.444yes
flagellatedno97.1yes
gram-positiveno97.533yes
anaerobicno98.458yes
aerobicyes87.945yes
halophileno76.246no
spore-formingno96.124no
thermophileno95.735yes
glucose-utilyes88.501yes
glucose-fermentno88.901no

External links

@ref: 6137

culture collection no.: DSM 15883, CIP 108006, LMG 21964, UCCCB126

straininfo link

  • @ref: 86707
  • straininfo: 99971

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny14742460Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea.Brettar I, Christen R, Hofle MGInt J Syst Evol Microbiol10.1099/ijs.0.02752-02004Bacteroides/*classification/cytology/growth & development/isolation & purification, Base Composition, Cytophaga/*classification/cytology/growth & development/isolation & purification, DNA, Bacterial/chemistry/genetics, Flavobacterium/*classification/cytology/growth & development/isolation & purification, Molecular Sequence Data, Phylogeny, Seawater/*microbiologyEnzymology
Phylogeny25716953Belliella aquatica sp. nov., isolated from a saline lake.Zhong ZP, Liu Y, Hou TT, Zhou YG, Liu HC, Liu ZPInt J Syst Evol Microbiol10.1099/ijs.0.0001482015Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26346194Belliella marina sp. nov., isolated from seawater.Song L, Liu H, Wang J, Huang Y, Dai X, Han X, Zhou YInt J Syst Evol Microbiol10.1099/ijsem.0.0005782015Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlepubmedID_cross_referencejournal
6137Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15883)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15883
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
2633310.1099/ijs.0.02752-014742460
29964Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126333
33871Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5581
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67772Curators of the UCCCBhttps://ucccb.uc.pt/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86707Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID99971.1StrainInfo: A central database for resolving microbial strain identifiers
116719Curators of the CIPCollection of Institut Pasteur (CIP 108006)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108006