Strain identifier

BacDive ID: 17621

Type strain: Yes

Species: Xanthomonas citri subsp. malvacearum

Strain Designation: XM13

Strain history: IAM 12309 (Xanthomonas axonopodis) <-- H. Takahashi <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 9924 <-- W. H. Burkholder; XM13 <-- R. Weindling.

NCBI tax ID(s): 346 (species)

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General

@ref: 1479

BacDive-ID: 17621

DSM-Number: 3849

keywords: 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas citri subsp. malvacearum XM13 is a mesophilic plant pathogen that was isolated from plant .

NCBI tax id

  • NCBI tax id: 346
  • Matching level: species

strain history

@refhistory
1479<- ATCC (Xanthomonas axonopodis pvar. malvacearum) <- W. H. Burkholder; XM13 (Xanthomonas malvacearum) <- R. Weindling
67770IAM 12309 (Xanthomonas axonopodis) <-- H. Takahashi <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 9924 <-- W. H. Burkholder; XM13 <-- R. Weindling.

doi: 10.13145/bacdive17621.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas citri subsp. malvacearum
  • full scientific name: Xanthomonas citri subsp. malvacearum (ex Smith 1901) Schaad et al. 2007

@ref: 1479

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas citri subsp. malvacearum

full scientific name: Xanthomonas citri subsp. malvacearum (ex Smith 1901) Schaad et al. 2007

strain designation: XM13

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1479REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a)yeshttps://mediadive.dsmz.de/medium/54aName: REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a) Composition: Glucose 20.0 g/l CaCO3 20.0 g/l Agar 17.0 g/l (optional) Yeast extract 10.0 g/l Distilled water
1479REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1479positivegrowth26mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

compound production

  • @ref: 1479
  • compound: restriction endonuclease XmaI

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1479plant (cotton)USAUSANorth America
67770CottonUSAUSANorth America

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: FR749944
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 1479
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xanthomonas smithii subsp. smithii 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequenceDQ660901519ena86040
20218Xanthomonas citri subsp. malvacearum partial 16S rRNA gene, type strain DSM 3849T, clone 1FR7499421541ena86040
20218Xanthomonas citri subsp. malvacearum partial 16S rRNA gene, type strain DSM 3849T, clone 2FR7499431542ena86040
20218Xanthomonas citri subsp. malvacearum partial 16S rRNA gene, type strain DSM 3849T, clone 3FR7499441545ena86040

External links

@ref: 1479

culture collection no.: DSM 3849, ATCC 9924, ICMP 217, ICPB 10528, JCM 20468, LMG 785, IAM 12309, LMG 11726

straininfo link

  • @ref: 86613
  • straininfo: 5719

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1479Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3849)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3849
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86613Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5719.1StrainInfo: A central database for resolving microbial strain identifiers