Xanthomonas citri subsp. malvacearum (DSM 3849, ATCC 9924, ICMP 217)

Name: Xanthomonas citri subsp. malvacearum (DSM 3849, ATCC 9924, ICMP 217)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17621

Type strain

Strain Designation XM13

Culture col. no. DSM 3849 ATCC 9924 ICMP 217 ICPB 10528 JCM 20468 4 more

NCBI tax ID(s) 346

Special Collections DSMZ JCM

History DSMZ <- ATCC (Xanthomonas axonopodis pvar. malvacearum) <- W. H. Burkholder; XM13 (Xanthomonas malvacearum) <- R. Weindling JCM <-- IAM 12309 (Xanthomonas axonopodis) <-- H. Takahashi <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 9924 <-- W. H. Burkholder; XM13 <-- R. Weindling.

Links

Xanthomonas citri subsp. malvacearum XM13 is a plant pathogen that was isolated from plant .

plant pathogen 16S sequence Bacteria

Name and taxonomic classification

SI-ID 5719

LMG 785,ICMP 2870,NCPPB 2005,PDDCC 2870,LMG 11726,ATCC 9924,ICMP 217,ATCC 49084,DSM 3849,IMI 349462,IAM 12309,ICMP 15803,JCM 20468,CFBP 7123,DSM 24447

@ref 20215

Last LPSN update 2026-05-29 08:29:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas citri subsp. malvacearum

Full scientific name Xanthomonas citri subsp. malvacearum (ex Smith 1901) Schaad et al. 2007

BacDive ID	Other strains from **Xanthomonas citri subsp. malvacearum** (1)	Type strain
17620	X. citri subsp. malvacearum R-10, DSM 1220

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1479	REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 54 (DSMZ Medium 54a) Composition: Glucose 20.0 g/l CaCO3 20.0 g/l Agar 17.0 g/l (optional) Yeast extract 10.0 g/l Distilled water
1479	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1479	positive	growth	26
67770	positive	growth	25

Physiology and metabolism

Compound production

1479

Compoundrestriction endonuclease XmaI

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
1479	plant (cotton)	USA	USA	North America
67770	Cotton	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FR749944 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
1479		1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Xanthomonas smithii subsp. smithii 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	DQ660901	519		86040

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Phylogenetic relatedness of Xanthomonas axonopodis pv. punicae, the causal agent of bacterial blight of pomegranate based on two loci, 16S rRNA and gyrB	Mondal KK, Verma G, Mani C.	Ann Microbiol	10.1007/s13213-012-0498-4	2013

References

#1479	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3849
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas citri subsp. malvacearum (DSM 3849, ATCC 9924, ICMP 217)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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