Strain identifier
BacDive ID: 17591
Type strain: 
Species: Xanthomonas fragariae
Strain history: <- LMG <- NCPPB <- B.W. Kennedy
NCBI tax ID(s): 48664 (species)
version 8.1 (current version)
General
@ref: 1412
BacDive-ID: 17591
DSM-Number: 3587
keywords: 16S sequence, Bacteria, aerobe, mesophilic, plant pathogen
description: Xanthomonas fragariae DSM 3587 is an aerobe, mesophilic plant pathogen that was isolated from Fragaria chiloensis var. ananassa.
NCBI tax id
- NCBI tax id: 48664
- Matching level: species
strain history
- @ref: 1412
- history: <- LMG <- NCPPB <- B.W. Kennedy
doi: 10.13145/bacdive17591.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas fragariae
- full scientific name: Xanthomonas fragariae Kennedy and King 1962 (Approved Lists 1980)
@ref: 1412
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas fragariae
full scientific name: Xanthomonas fragariae Kennedy and King 1962 emend. van den Mooter and Swings 1990
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1412 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 1412 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1412 | positive | growth | 28 | mesophilic |
| 47802 | positive | growth | 20-30 |
Physiology and metabolism
oxygen tolerance
- @ref: 47802
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 1412 | Fragaria chiloensis var. ananassa | Fragaria chiloensis var. ananassa | USA | USA | North America | |
| 47802 | USA | USA | North America | 1960 |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_92.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: X95920
- Sequence Identity:
- Total samples: 52152
- soil counts: 10026
- aquatic counts: 6826
- animal counts: 28252
- plant counts: 7048
Safety information
risk assessment
- @ref: 1412
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Xanthomonas fragariae clone K0889 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence | HM181896 | 559 | ena | 48664 |
| 20218 | Xanthomonas fragariae 16S ribosomal RNA gene, partial sequence and 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF260972 | 512 | ena | 48664 |
| 20218 | X.fragariae 16S rRNA gene | X95920 | 1502 | ena | 48664 |
External links
@ref: 1412
culture collection no.: DSM 3587, ATCC 33239, NCPPB 1469, PDDCC 5715, CCUG 23372
straininfo link
- @ref: 86586
- straininfo: 6099
literature
- Pubmed-ID: 25773973
- title: Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.
- authors: Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-015-6476-6
- year: 2015
- mesh: Bacterial Physiological Phenomena/*radiation effects, Biological Specimen Banks, Freeze Drying/*methods, Microbial Viability/*radiation effects, Preservation, Biological/*methods
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1412 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3587) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3587 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 47802 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 23372) | https://www.ccug.se/strain?id=23372 | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86586 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID6099.1 | StrainInfo: A central database for resolving microbial strain identifiers |