Xanthomonas fragariae (DSM 3587, ATCC 33239, NCPPB 1469)

Name: Xanthomonas fragariae (DSM 3587, ATCC 33239, NCPPB 1469)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17591

Type strain

Culture col. no. DSM 3587 ATCC 33239 NCPPB 1469 PDDCC 5715 CCUG 23372 1 more

NCBI tax ID(s) 48664

Special Collections DSMZ CCUG

History <- LMG <- NCPPB <- B.W. Kennedy

Links

Xanthomonas fragariae DSM 3587 is an aerobe plant pathogen that was isolated from Fragaria chiloensis var. ananassa.

aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 6099

LMG 708,ATCC 33239,CECT 549,CFBP 2157,DSM 3587,ICMP 5715,LMG 12702,NCPPB 1469,PDDCC 5715,CCUG 23372,VKM B-2165,CCRC 13206,BCRC 13206,KACC 11115,CFBP 6766

@ref 20215

Last LPSN update 2026-02-09 11:22:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas fragariae

Full scientific name Xanthomonas fragariae Kennedy and King 1962 (Approved Lists 1980)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1412	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
1412	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1412	positive	growth	28
47802	positive	growth	20-30

Physiology and metabolism

Oxygen tolerance

47802

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Sampling date
1412	Fragaria chiloensis var. ananassa	Fragaria chiloensis var. ananassa	USA	USA	North America
47802			USA	USA	North America	1960

Taxonmaps

69479

Global distribution of 16S sequence X95920 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
1412		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	PD885.1 assembly for Xanthomonas fragariae PD885	complete	GCA_900183975	48664.39	2811995021	48664	98.68

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Xanthomonas fragariae 16S ribosomal RNA gene, partial sequence and 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF260972	512		48664
20218	X.fragariae 16S rRNA gene	X95920	1502		48664

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments.	Straub KL, Buchholz-Cleven BE.	Appl Environ Microbiol	10.1128/aem.64.12.4846-4856.1998	1998
	Relatedness of strains of xanthomonas fragariae by restriction fragment length polymorphism, DNA-DNA reassociation, and fatty acid analyses	Roberts PD, Hodge NC, Bouzar H, Jones JB, Stall RE, Berger RD, Chase AR.	Appl Environ Microbiol	10.1128/aem.64.10.3961-3965.1998	1998
	Identification of Xanthomonas fragariae field isolates by rep-PCR genomic fingerprinting	Opgenorth DC, Smart CD, Louws FJ, De Bruijn FJ, Kirkpatrick BC.	Plant Dis		1996
	Genetic relationships among strains of Xanthomonas fragariae based on random amplified polymorphic DNA PCR, repetitive extragenic palindromic PCR, and enterobacterial repetitive intergenic consensus PCR data and generation of multiplexed PCR primers useful for the identification of this phytopathogen.	Pooler MR, Ritchie DF, Hartung JS.	Appl Environ Microbiol	10.1128/aem.62.9.3121-3127.1996	1996
	Isolation of an insertion sequence (IS1051) from Xanthomonas campestris pv. dieffenbachiae with potential use for strain identification and characterization.	Berthier Y, Thierry D, Lemattre M, Guesdon JL.	Appl Environ Microbiol	10.1128/aem.60.1.377-384.1994	1994
	Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.	Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR	Appl Microbiol Biotechnol	10.1007/s00253-015-6476-6	2015

References

#1412	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3587
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#47802	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23372
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xanthomonas fragariae (DSM 3587, ATCC 33239, NCPPB 1469)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900183975

16S sequences

Genome-based predictions

Literature

Literature

References

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