Strain identifier

BacDive ID: 17528

Type strain: Yes

Species: Ignatzschineria indica

Strain Designation: FFA1

Strain history: <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; FFA1 <- A. K. Gupta

NCBI tax ID(s): 472583 (species)

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General

@ref: 16270

BacDive-ID: 17528

DSM-Number: 22309

keywords: genome sequence, 16S sequence, Bacteria

description: Ignatzschineria indica FFA1 is a bacterium that was isolated from mid gut contents of adult flesh flies .

NCBI tax id

  • NCBI tax id: 472583
  • Matching level: species

strain history

  • @ref: 16270
  • history: <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; FFA1 <- A. K. Gupta

doi: 10.13145/bacdive17528.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cardiobacteriales
  • family: Ignatzschineriaceae
  • genus: Ignatzschineria
  • species: Ignatzschineria indica
  • full scientific name: Ignatzschineria indica Gupta et al. 2011

@ref: 16270

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Gammaproteobacteria, not assigned to family

genus: Ignatzschineria

species: Ignatzschineria indica

full scientific name: Ignatzschineria indica Gupta et al. 2011

strain designation: FFA1

type strain: yes

Isolation, sampling and environmental information

isolation

  • @ref: 16270
  • sample type: mid gut contents of adult flesh flies (Diptera: Sarcophagidae)
  • host species: Diptera: Sarcophagidae
  • geographic location: North Western Ghats, Pune
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_18418.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16053;96_3775;97_4651;98_5972;99_18418&stattab=map
  • Last taxonomy: Ignatzschineria
  • 16S sequence: EU008088
  • Sequence Identity:
  • Total samples: 890
  • soil counts: 131
  • aquatic counts: 164
  • animal counts: 564
  • plant counts: 31

Safety information

risk assessment

  • @ref: 16270
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16270
  • description: Ignatzschineria indica strain FFA1 16S ribosomal RNA gene, partial sequence
  • accession: EU008088
  • length: 1549
  • database: ena
  • NCBI tax ID: 472583

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ignatzschineria indica KCTC 22643GCA_003121925contigncbi472583
66792Ignatzschineria indica KCTC 22643GCA_014652015scaffoldncbi472583
66792Ignatzschineria indica strain KCTC 22643472583.4wgspatric472583
66792Ignatzschineria indica strain KCTC 22643472583.3wgspatric472583
66792Ignatzschineria indica KCTC 226432832037495draftimg472583

GC content

  • @ref: 16270
  • GC-content: 41.1
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.867no
gram-positiveno97.8no
anaerobicno96.629no
aerobicyes78.51no
halophileno61.898no
spore-formingno98.085no
glucose-utilno72.985no
thermophileno99.101no
motileno92.925no
glucose-fermentno86.236no

External links

@ref: 16270

culture collection no.: DSM 22309, KCTC 22643, NCIM 5325

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20584814Ignatzschineria indica sp. nov. and Ignatzschineria ureiclastica sp. nov., isolated from adult flesh flies (Diptera: Sarcophagidae).Gupta AK, Dharne MS, Rangrez AY, Verma P, Ghate HV, Rohde M, Patole MS, Shouche YSInt J Syst Evol Microbiol10.1099/ijs.0.018622-02010Aerobiosis, Animals, Base Composition, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gastrointestinal Tract/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sarcophagidae/*microbiology, Sequence Analysis, DNA, Xanthomonadaceae/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny36088525Ignatzschineria rhizosphaerae sp. nov. Isolated from Rhizosphere Soil of the Halophyte Kalidium cuspidatum.Feng JY, Xu L, Woo PCY, Sun JQCurr Microbiol10.1007/s00284-022-03020-22022Bacterial Typing Techniques, DNA, Bacterial/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Salt-Tolerant Plants, Sequence Analysis, DNA, Soil, *Xanthomonadaceae/geneticsTranscriptome

Reference

@idauthorscataloguedoi/urltitle
16270Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22309)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22309
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta