Ignatzschineria indica (DSM 22309, KCTC 22643, NCIM 5325)

Name: Ignatzschineria indica (DSM 22309, KCTC 22643, NCIM 5325)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17528

Type strain

Strain Designation FFA1

Culture col. no. DSM 22309 KCTC 22643 NCIM 5325 FFA1

NCBI tax ID(s) 472583

Special Collections DSMZ KCTC

Links

Ignatzschineria indica FFA1 is a prokaryote that was isolated from mid gut contents of adult flesh flies .

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286140

KCTC 22643

@ref 20215

Last LPSN update 2025-12-16 09:51:07

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cardiobacteriales

Family Ignatzschineriaceae

Genus Ignatzschineria

Species Ignatzschineria indica

Full scientific name Ignatzschineria indica Gupta et al. 2011

BacDive ID	Other strains from **Ignatzschineria indica** (1)	Type strain
175320	I. indica 111613, DSM 111613

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.1
125438	negative	98

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.3
125438		93.231

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16270	mid gut contents of adult flesh flies (Diptera: Sarcophagidae)	Diptera: Sarcophagidae	North Western Ghats, Pune	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU008088 (>99% sequence identity) for Ignatzschineria from Microbeatlas

Aquatic Samples	164
Soil Samples	131
Animal Samples	564
Plant Samples	31
Total Samples	890

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16270	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465201v1 assembly for Ignatzschineria indica KCTC 22643	scaffold	GCA_014652015	472583.4	8065338428	472583	64.62
66792	ASM312192v1 assembly for Ignatzschineria indica KCTC 22643	contig	GCA_003121925	472583.3	2832037495	472583	61.25
124043	ASM4268546v1 assembly for Ignatzschineria indica KCTC 22643	contig	GCA_042685465			472583	39.21

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
16270	Ignatzschineria indica strain FFA1 16S ribosomal RNA gene, partial sequence	EU008088	1549	472583
124043	Ignatzschineria indica KCTC 22643 gene for 16S ribosomal RNA, partial sequence.	LC377581	1488	472583
124043	Ignatzschineria indica strain KCTC 22643 16S ribosomal RNA gene, partial sequence.	MT759850	1379	472583
124043	Ignatzschineria indica strain KCTC 22643 16S ribosomal RNA gene, partial sequence.	MT758087	1379	472583

GC content

@ref	GC-content (mol%)	Method
16270	41.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ignatzschineria indica KCTC 22643
NCBI: GCA_014652015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	yes	52.30	no
125439	gram_stain	BacteriaNetⓘ	negative	97.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ignatzschineria indica KCTC 22643
NCBI: GCA_014652015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	93.78	no
125438	aerobic	aerobicⓘ	yes	64.95	no
125438	spore-forming	spore-formingⓘ	no	93.23	no
125438	thermophilic	thermophileⓘ	no	93.32	no
125438	flagellated	motile2+ⓘ	no	79.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ignatzschineria indica sp. nov. and Ignatzschineria ureiclastica sp. nov., isolated from adult flesh flies (Diptera: Sarcophagidae).	Gupta AK, Dharne MS, Rangrez AY, Verma P, Ghate HV, Rohde M, Patole MS, Shouche YS	Int J Syst Evol Microbiol	10.1099/ijs.0.018622-0	2010
Phylogeny	Ignatzschineria rhizosphaerae sp. nov. Isolated from Rhizosphere Soil of the Halophyte Kalidium cuspidatum.	Feng JY, Xu L, Woo PCY, Sun JQ	Curr Microbiol	10.1007/s00284-022-03020-2	2022

References

#16270	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22309
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ignatzschineria indica (DSM 22309, KCTC 22643, NCIM 5325)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014652015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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