Strain identifier

BacDive ID: 17467

Type strain: Yes

Species: Luteimonas composti

Strain Designation: CC-YY255

Strain history: CIP <- 2006, P. Kämpfer, Justus-Liebig Univ., Giessen, Germany: strain CC-YY255

NCBI tax ID(s): 398257 (species)

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General

@ref: 8319

BacDive-ID: 17467

DSM-Number: 19790

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Luteimonas composti CC-YY255 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from compost from food waste.

NCBI tax id

  • NCBI tax id: 398257
  • Matching level: species

strain history

@refhistory
8319<- P. Kämpfer, Univ. Giessen, Germany <- C.-C. Young, College of Agriculture and Natural Resources, Taichung
118717CIP <- 2006, P. Kämpfer, Justus-Liebig Univ., Giessen, Germany: strain CC-YY255

doi: 10.13145/bacdive17467.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Luteimonas
  • species: Luteimonas composti
  • full scientific name: Luteimonas composti Young et al. 2007

@ref: 8319

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Luteimonas

species: Luteimonas composti

full scientific name: Luteimonas composti Young et al. 2007 emend. Lin et al. 2016

strain designation: CC-YY255

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31951negative1-1.5 µm0.5 µmrod-shapedno
118717negativerod-shapedyes

colony morphology

  • @ref: 59939
  • incubation period: 1 day

pigmentation

  • @ref: 31951
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8319TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33290MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118717CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
8319positivegrowth28
31951positivegrowth20-45
31951positiveoptimum30
33290positivegrowth30
59939positivegrowth30-37

culture pH

@refabilitytypepHPH range
31951positivegrowth07-10alkaliphile
31951positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31951aerobe
59939aerobe
118717obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
31951NaClpositivegrowth0-6 %
31951NaClpositiveoptimum0-0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3195121217L-alaninamide+carbon source
3195135391aspartate+carbon source
3195117234glucose+carbon source
3195129987glutamate+carbon source
3195117596inosine+carbon source
3195117306maltose+carbon source
3195128053melibiose+carbon source
3195151850methyl pyruvate+carbon source
319514853esculin+hydrolysis
3195117632nitrate+reduction
11871717632nitrate+reduction
11871716301nitrite+reduction

metabolite production

  • @ref: 118717
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31951catalase+1.11.1.6
31951cytochrome oxidase+1.9.3.1
118717oxidase+
118717catalase+1.11.1.6
118717urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118717-+++-++-++++++-++++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8319compost from food wasteKinmen CountyTaiwan, Province of ChinaTWNAsia
59939Compost,food wasteKinmen CountyTaiwan, Province of ChinaTWNAsia
118717Environment, CompostTaiwan, Province of ChinaTWNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Composting
#Engineered#Food production#Food
#Engineered#Waste#Domestic waste

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
83191Risk group (German classification)
1187171Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8319
  • description: Luteimonas composti strain CC-YY255 16S ribosomal RNA gene, partial sequence
  • accession: DQ846687
  • length: 1501
  • database: nuccore
  • NCBI tax ID: 398257

GC content

  • @ref: 31951
  • GC-content: 68.1

External links

@ref: 8319

culture collection no.: CCUG 53282, DSM 19790, BCRC 17598, CCUG 53595, CIP 109311

straininfo link

  • @ref: 86463
  • straininfo: 302765

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17392198Luteimonas composti sp. nov., a moderately thermophilic bacterium isolated from food waste.Young CC, Kampfer P, Chen WM, Yen WS, Arun AB, Lai WA, Shen FT, Rekha PD, Lin KY, Chou JHInt J Syst Evol Microbiol10.1099/ijs.0.64701-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Food Microbiology, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Taiwan, Temperature, Xanthomonadaceae/*classification/genetics/isolation & purification/physiologyBiotechnology
Phylogeny18768603Luteimonas aquatica sp. nov., isolated from fresh water from Southern Taiwan.Chou JH, Cho NT, Arun AB, Young CC, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.65684-02008Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Microbial Sensitivity Tests, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Spores, Bacterial/cytology, Taiwan, Xanthomonadaceae/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny18974953Luteimonas aestuarii sp. nov., isolated from tidal flat sediment.Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Yoon JH, Oh HM, Bae JWJ Microbiol10.1007/s12275-008-0189-92008DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Xanthomonadaceae/classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny19060080Luteimonas marina sp. nov., isolated from seawater.Baik KS, Park SC, Kim MS, Kim EM, Park C, Chun J, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.2008/000281-02008Fatty Acids/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity, Xanthomonadaceae/chemistry/*classification/genetics/*physiologyGenetics
Phylogeny33258058Luteimonas wenzhouensis Sp. Nov., A Chitinolytic Bacterium Isolated from a Landfill Soil.Zhou J, Chen J, Ma J, Xu N, Xin F, Zhang W, Zhang H, Dong W, Jiang MCurr Microbiol10.1007/s00284-020-02293-92020Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, Waste Disposal Facilities, XanthomonadaceaeTranscriptome
Phylogeny35471135Luteimonas saliphila sp. nov. and Luteimonas salinisoli sp. nov., two novel strains isolated from saline soils.Sun JQ, Huang XX, Xu L, Wei HMInt J Syst Evol Microbiol10.1099/ijsem.0.0053342022Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *SoilTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8319Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19790)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19790
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31951Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2820728776041
33290Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7039
59939Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53595)https://www.ccug.se/strain?id=53595
68382Automatically annotated from API zym
86463Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID302765.1StrainInfo: A central database for resolving microbial strain identifiers
118717Curators of the CIPCollection of Institut Pasteur (CIP 109311)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109311