Strain identifier

BacDive ID: 17443

Type strain: Yes

Species: Aquimonas voraii

Strain history: CIP <- 2005, JCM <- 2004, T. Chakrabarti, Chandigarh, India: strain GPTSA 20

NCBI tax ID(s): 1121008 (strain), 265719 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6668

BacDive-ID: 17443

DSM-Number: 16957

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Aquimonas voraii DSM 16957 is an aerobe, Gram-negative, motile bacterium that was isolated from water.

NCBI tax id

NCBI tax idMatching level
265719species
1121008strain

strain history

@refhistory
6668<- T. Chakrabarti; GPTSA 20
67770T. Chakrabarti GPTSA 20.
123883CIP <- 2005, JCM <- 2004, T. Chakrabarti, Chandigarh, India: strain GPTSA 20

doi: 10.13145/bacdive17443.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Rhodanobacteraceae
  • genus: Aquimonas
  • species: Aquimonas voraii
  • full scientific name: Aquimonas voraii Saha et al. 2005

@ref: 6668

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Rhodanobacteraceae

genus: Aquimonas

species: Aquimonas voraii

full scientific name: Aquimonas voraii Saha et al. 2005

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31437negative3 µm0.35 µmrod-shapedyes
69480yes91.351
69480negative99.995
123883negativerod-shapedyes

colony morphology

  • @ref: 123883

pigmentation

  • @ref: 31437
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38350MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123883CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
31437positivegrowth25-42
31437positiveoptimum33.5mesophilic
38350positivegrowth30mesophilic
67770positivegrowth30mesophilic
123883positivegrowth22-37
123883nogrowth10psychrophilic
123883nogrowth45thermophilic
123883nogrowth55thermophilic

culture pH

@refabilitytypepHPH range
31437positivegrowth06-11alkaliphile
31437positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31437
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
31437NaClpositivegrowth<2 %
123883NaClnogrowth0 %
123883NaClnogrowth2 %
123883NaClnogrowth4 %
123883NaClnogrowth6 %
123883NaClnogrowth8 %
123883NaClnogrowth10 %

observation

  • @ref: 31437
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3143715963ribitol+carbon source
3143722599arabinose+carbon source
314375291gelatin+carbon source
3143753424tween 20+carbon source
3143753423tween 40+carbon source
3143753426tween 80+carbon source
1238834853esculin+hydrolysis
12388317632nitrate-reduction
12388316301nitrite-reduction
12388317632nitrate-respiration

metabolite production

  • @ref: 123883
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31437catalase+1.11.1.6
31437gelatinase+
31437cytochrome oxidase+1.9.3.1
123883oxidase+
123883beta-galactosidase-3.2.1.23
123883alcohol dehydrogenase-1.1.1.1
123883gelatinase+
123883amylase+
123883DNase+
123883caseinase+3.4.21.50
123883catalase+1.11.1.6
123883tween esterase+
123883gamma-glutamyltransferase+2.3.2.2
123883lecithinase+
123883lipase+
123883lysine decarboxylase-4.1.1.18
123883ornithine decarboxylase-4.1.1.17
123883phenylalanine ammonia-lyase-4.3.1.24
123883urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123883-+++-+--++++---+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6668waterAssamIndiaINDAsia
67770Warm spring waterAssamIndiaINDAsia
123883Environment, Water, warn spring sample collected from AssamIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_7584.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_3534;97_4340;98_5555;99_7584&stattab=map
  • Last taxonomy: Aquimonas voraii subclade
  • 16S sequence: AY544768
  • Sequence Identity:
  • Total samples: 10813
  • soil counts: 1420
  • aquatic counts: 7467
  • animal counts: 1449
  • plant counts: 477

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
66681Risk group (German classification)
1238831Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6668
  • description: Aquimonas voraii strain GPTSA 20 16S ribosomal RNA gene, partial sequence
  • accession: AY544768
  • length: 1433
  • database: ena
  • NCBI tax ID: 265719

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquimonas voraii strain DSM 16957265719.9wgspatric265719
66792Aquimonas voraii DSM 169572622736515draftimg1121008
67770Aquimonas voraii DSM 16957GCA_900101825scaffoldncbi265719

GC content

@refGC-contentmethod
666875
6777075thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 100
  • training_data: no

External links

@ref: 6668

culture collection no.: DSM 16957, JCM 12896, MTCC 6713, GPTSA 20, CIP 108872

straininfo link

  • @ref: 86439
  • straininfo: 265382

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16014470Aquimonas voraii gen. nov., sp. nov., a novel gammaproteobacterium isolated from a warm spring of Assam, India.Saha P, Krishnamurthi S, Mayilraj S, Prasad GS, Bora TC, Chakrabarti TInt J Syst Evol Microbiol10.1099/ijs.0.63552-02005Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Hot Springs/*microbiology, India, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Xanthomonadaceae/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny23475342Chiayiivirga flava gen. nov., sp. nov., a novel bacterium of the family Xanthomonadaceae isolated from an agricultural soil, and emended description of the genus Dokdonella.Hsu YH, Lai WA, Lin SY, Hameed A, Shahina M, Shen FT, Zhu ZL, Young LS, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.048579-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analysis, Taiwan, Ubiquinone/analysis, Xanthomonadaceae/*classification/genetics/isolation & purificationGenetics
Phylogeny29923816Ahniella affigens gen. nov., sp. nov., a gammaproteobacterium isolated from sandy soil near a stream.Hwang WM, Ko Y, Kim JH, Kang KInt J Syst Evol Microbiol10.1099/ijsem.0.0028592018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rivers, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
6668Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16957)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16957
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31437Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2774228776041
38350Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6550
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86439Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265382.1StrainInfo: A central database for resolving microbial strain identifiers
123883Curators of the CIPCollection of Institut Pasteur (CIP 108872)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108872