Strain identifier

BacDive ID: 1744

Type strain: No

Species: Bifidobacterium longum subsp. infantis

Strain Designation: S76E

Strain history: DSM 20090 <-- ATCC 15702 <-- G. Reuter S76E ("Bifidobacterium liberorum").

NCBI tax ID(s): 1682 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8516

BacDive-ID: 1744

DSM-Number: 20090

keywords: anaerobe, Bacteria, 16S sequence, mesophilic

description: Bifidobacterium longum subsp. infantis S76E is an anaerobe, mesophilic bacterium that was isolated from intestine of infant.

NCBI tax id

  • NCBI tax id: 1682
  • Matching level: subspecies

strain history

doi: 10.13145/bacdive1744.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium longum subsp. infantis
  • full scientific name: Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium infantis

@ref: 8516

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium longum subsp. infantis

full scientific name: Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008

strain designation: S76E

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8516BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)yeshttps://bacmedia.dsmz.de/medium/58Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
38032MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)

culture temp

@refgrowthtypetemperaturerange
8516positivegrowth37mesophilic
38032positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8516
  • oxygen tolerance: anaerobe

murein

  • @ref: 8516
  • murein short key: A21.03
  • type: A3ß L-Orn-L-Ser-L-Ala-L-Thr-L-Ala

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-fructose+builds acid from15824
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371L-arabinose-builds acid from30849
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8516---+--+---++++---+-------+--++++---+--------+-----
8516-----+------+------------+--++-+--+---------------

Isolation, sampling and environmental information

isolation

@refsample type
8516intestine of infant
67770Intestine of infant

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 8516
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bifidobacterium longum subsp. infantis gene for 16S rRNA, partial sequence, strain: JCM 1272AB116307475ena1682
20218Bifidobacterium longum gene for 16S rRNA, partial sequence, strain: JCM 1272AB507105664ena216816

GC content

@refGC-contentmethod
851661.4
6777060.3thermal denaturation, midpoint method (Tm)

External links

@ref: 8516

culture collection no.: DSM 20090, ATCC 15702, JCM 1272, BCRC 14602, CECT 4553, CIP 64.71, KCTC 3460, LMG 10500, NCFB 2256

straininfo link

@refpassport
20218http://www.straininfo.net/strains/5507
20218http://www.straininfo.net/strains/5503
20218http://www.straininfo.net/strains/5508

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8516Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20090)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20090
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38032Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10177
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid