Strain identifier
BacDive ID: 17409
Type strain: 
Species: Labrys monacha
Strain history: IAM 15350 <-- DSM 5896 <-- VKM B-1479.
NCBI tax ID(s): 217067 (species)
version 8.1 (current version)
General
@ref: 2153
BacDive-ID: 17409
DSM-Number: 5896
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Labrys monacha DSM 5896 is a mesophilic bacterium that was isolated from silt.
NCBI tax id
- NCBI tax id: 217067
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2153 | <- VKM |
| 67770 | IAM 15350 <-- DSM 5896 <-- VKM B-1479. |
doi: 10.13145/bacdive17409.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Xanthobacteraceae
- genus: Labrys
- species: Labrys monacha
- full scientific name: Labrys monacha corrig. Vasilyeva and Semenov 1985
synonyms
@ref synonym 20215 Labrys monahos 20215 Labrys monachus
@ref: 2153
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Xanthobacteraceae
genus: Labrys
species: Labrys monachus
full scientific name: Labrys monachus Vasilyeva and Semenov 1985 emend. Islam et al. 2007
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2153
- name: MMB MEDIUM (DSMZ Medium 628)
- growth: yes
- link: https://mediadive.dsmz.de/medium/628
- composition: Name: MMB MEDIUM (DSMZ Medium 628) Composition: Glucose 1.0 g/l MgSO4 x 7 H2O 0.594 g/l (NH4)2SO4 0.25 g/l Nitrilotriacetic acid 0.2 g/l Yeast extract 0.15 g/l Peptone 0.15 g/l CaCl2 x 2 H2O 0.0667 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Calcium pantothenate 5e-05 g/l Pyridoxine hydrochloride 5e-05 g/l Riboflavin 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2153 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 2153 | silt | Lake Mustijary | Estonia | EST | Europe |
| 67770 | Silt of Lake Mustijärv | Estonia | EST | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_141377.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_116;97_123;98_138;99_141377&stattab=map
- Last taxonomy: Labrys monachus
- 16S sequence: AJ535707
- Sequence Identity:
- Total samples: 530
- soil counts: 460
- aquatic counts: 16
- animal counts: 50
- plant counts: 4
Safety information
risk assessment
- @ref: 2153
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2153
- description: Labrys monachus 16S rRNA gene, strain VKM-B1479
- accession: AJ535707
- length: 1442
- database: ena
- NCBI tax ID: 217067
Genome sequences
- @ref: 66792
- description: Labrys monachus DSM 5896
- accession: 2927548933
- assembly level: draft
- database: img
- NCBI tax ID: 217067
GC content
- @ref: 67770
- GC-content: 66.9-68.9
External links
@ref: 2153
culture collection no.: DSM 5896, ATCC 43932, BKM B-1479, VKM B-1479, JCM 21795, IAM 15350
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15143003 | Phylogenetic relationships of the genera Stella, Labrys and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov. | Fritz I, Strompl C, Abraham WR | Int J Syst Evol Microbiol | 10.1099/ijs.0.02746-0 | 2004 | Acetobacteraceae/*classification/genetics/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Genes, Bacterial, Hyphomicrobiaceae/*classification/genetics/metabolism, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 17329783 | Labrys okinawensis sp. nov. and Labrys miyagiensis sp. nov., budding bacteria isolated from rhizosphere habitats in Japan, and emended descriptions of the genus Labrys and Labrys monachus. | Islam MS, Kawasaki H, Nakagawa Y, Hattori T, Seki T | Int J Syst Evol Microbiol | 10.1099/ijs.0.64239-0 | 2007 | Alphaproteobacteria/chemistry/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Genetics |
| Phylogeny | 17329788 | Labrys neptuniae sp. nov., isolated from root nodules of the aquatic legume Neptunia oleracea. | Chou YJ, Elliott GN, James EK, Lin KY, Chou JH, Sheu SY, Sheu DS, Sprent JI, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.64553-0 | 2007 | Alphaproteobacteria/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fabaceae/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Taiwan | Genetics |
| Phylogeny | 19684322 | Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys. | Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.014977-0 | 2009 | Alphaproteobacteria/*classification/genetics/isolation & purification/physiology, Base Sequence, Fresh Water/*microbiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Genetics |
| Phylogeny | 28875912 | Labrys soli sp. nov., isolated from the rhizosphere of ginseng. | Nguyen NL, Kim YJ, Hoang VA, Kang JP, Wang C, Zhang J, Kang CH, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000512 | 2015 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2153 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5896) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5896 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |