Strain identifier

BacDive ID: 17219

Type strain: Yes

Species: Grimontia hollisae

Strain Designation: 75-80

Strain history: CIP <- 1985, ATCC <- F.W. Hickmann: strain 75-80, Maryland State Hlth. Dept., USA <- A. Arundel, Gen. Hosp. Annapolis, USA

NCBI tax ID(s): 675812 (strain), 673 (species)

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General

@ref: 5629

BacDive-ID: 17219

DSM-Number: 15132

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Grimontia hollisae 75-80 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces.

NCBI tax id

NCBI tax idMatching level
675812strain
673species

strain history

@refhistory
5629<- ATCC <- F. W. Hickman; 75-80 <- Maryland State Hlth Dept. <- Arundel Gen. Hosp., Annapolis
67770R. Sakazaki 82069 <-- ATCC 33564 <-- F. W. Hickman 75-80 <-- Maryland State Health Dept., USA <-- Anne Arundel Gen. Hosp., Annapolis, MD, USA.
119930CIP <- 1985, ATCC <- F.W. Hickmann: strain 75-80, Maryland State Hlth. Dept., USA <- A. Arundel, Gen. Hosp. Annapolis, USA

doi: 10.13145/bacdive17219.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Grimontia
  • species: Grimontia hollisae
  • full scientific name: Grimontia hollisae (Hickman et al. 1982) Thompson et al. 2003

  • synonyms

    • @ref: 20215
    • synonym: Vibrio hollisae

@ref: 5629

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Grimontia

species: Grimontia hollisae

full scientific name: Grimontia hollisae (Hickman et al. 1982) Thompson et al. 2003

strain designation: 75-80

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative100
125439negative98.9
119930negativerod-shapedyes

colony morphology

@refincubation periodhemolysis ability
459931 day
1199301

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5629REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)yeshttps://mediadive.dsmz.de/medium/514cName: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40305Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119930CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
5629positivegrowth30
40305positivegrowth30
45993positivegrowth30
67770positivegrowth26
119930positivegrowth22-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
45993aerobe
119930facultative anaerobe

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 97.5

halophily

@refsaltgrowthtested relationconcentration
119930NaClpositivegrowth2-6 %
119930NaClnogrowth0 %
119930NaClnogrowth8 %
119930NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418333D-arabitol-builds acid from
6837427897tryptophan+energy source
6837417634D-glucose-builds acid from
6837415792malonate-assimilation
6837418394palatinose-builds acid from
6837415963ribitol-builds acid from
6837417306maltose-builds acid from
6837416899D-mannitol-builds acid from
6837418024D-galacturonic acid-builds acid from
6837418403L-arabitol-builds acid from
6837425094lysine-degradation
6837416199urea-hydrolysis
11993016947citrate-carbon source
11993017234glucose+fermentation
11993017716lactose-fermentation
11993017632nitrate+reduction
11993016301nitrite-reduction
119930132112sodium thiosulfate-builds gas from
68371Potassium 5-ketogluconate-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837430911sorbitol-builds acid from
6837417057cellobiose-builds acid from
6837417268myo-inositol-builds acid from
6837462345L-rhamnose-builds acid from
6837427082trehalose-builds acid from
6837430849L-arabinose-builds acid from
6837417992sucrose-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837429016arginine-hydrolysis
6837418257ornithine-degradation
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836929016arginine-hydrolysis
6836917632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
11993035581indoleyes
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837435581indole+
6836815688acetoin-
6836835581indole+
11993015688acetoin-
11993017234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119930oxidase+
119930beta-galactosidase+3.2.1.23
119930alcohol dehydrogenase-1.1.1.1
119930gelatinase-
119930amylase-
119930DNase+
119930catalase-1.11.1.6
119930lysine decarboxylase-4.1.1.18
119930ornithine decarboxylase-4.1.1.17
119930urease+3.5.1.5
68374alpha-maltosidase-
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68382beta-galactosidase-3.2.1.23
68382alpha-chymotrypsin-3.4.21.1
68374L-aspartate arylamidase-3.4.11.21
68374alpha-galactosidase-3.2.1.22
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369arginine dihydrolase-3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45993C12:0212
    45993C14:0414
    45993C15:00.215
    45993C16:023.716
    45993C17:00.417
    45993C18:03.418
    4599311 methyl 18:1 ω7c0.418.081
    45993C12:0 3OH3.313.455
    45993C12:0 ALDE ?0.610.915
    45993C13:0 ISO 2OH1.713.814
    45993C14:0 3OH/C16:1 ISO I3.715.485
    45993C16:0 iso0.715.626
    45993C16:1 ω5c0.215.908
    45993C16:1 ω7c29.915.819
    45993C16:1 ω9c3.115.774
    45993C17:1 ω8c0.716.792
    45993C18:0 ISO0.317.632
    45993C18:1 ω7c /12t/9t17.617.824
    45993C18:1 ω9c2.917.769
    45993C18:2 ω6,9c/C18:0 ANTE0.317.724
    45993C20:1 ω7c0.419.833
    45993unknown 12.4860.612.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119930-+++-++---++---++---

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
45993--------+--+--------+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5629+++-----+++-+++--++-+
5629+---+---+++-+++--+--+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119930+--++----++++--------+-----+/---++/---------------+--

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
45993-------+-+------+---------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119930+++++--+-++----++++++--+--+---++----------++-----+++--++++-++-+-+-------+-++--+++-+---+--+++-++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5629human faecesMarylandUSAUSANorth America
45993Human fecesAnnapolisUSAUSANorth America
67770StoolMDUSAUSANorth America
119930Human, Feces

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3588.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_1864;97_2240;98_2748;99_3588&stattab=map
  • Last taxonomy: Grimontia hollisae subclade
  • 16S sequence: X74707
  • Sequence Identity:
  • Total samples: 931
  • soil counts: 27
  • aquatic counts: 464
  • animal counts: 432
  • plant counts: 8

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
56292Risk group (German classification)
1199302Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Grimontia hollisae 16S ribosomal RNA gene, partial sequenceDQ0689391452nuccore673
20218Grimontia hollisae 16S ribosomal RNA gene, partial sequenceHM7713531470nuccore673
20218V.hollisae 16S ribosomal RNAX565831483nuccore673
20218V.hollisae(ATCC 33564T) gene for 16S ribosomal RNAX747071465nuccore673
20218Vibrio hollisae 16S rRNAD11206171nuccore673
20218Vibrio hollisae 16S rRNAD11255211nuccore673
20218Vibrio hollisae 16S rRNAD11304191nuccore673
20218Vibrio hollisae partial 16S rRNA gene, type strain LMG 17719TAJ5149091504nuccore673

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Grimontia hollisae NCTC11640GCA_900450635contigncbi673
66792Grimontia hollisae CIP 101886675812.3wgspatric675812
66792Grimontia hollisae strain ATCC 33564673.5completepatric673
66792Grimontia hollisae strain NCTC11640673.9wgspatric673
66792Grimontia hollisae CIP 101886647000258draftimg675812
66792Grimontia hollisae NCTC 116402839397828draftimg673
66792Grimontia hollisae ATCC 335642718217809completeimg673
67770Grimontia hollisae CIP 101886GCA_000176515contigncbi675812
67770Grimontia hollisae FDAARGOS_111GCA_001558255completencbi673

GC content

  • @ref: 67770
  • GC-content: 49.8
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno100no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no93.136yes
125438spore-formingspore-formingAbility to form endo- or exosporesno89.071no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no65.801no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.5yes
125438motile2+flagellatedAbility to perform flagellated movementyes86.53no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97.5
125439BacteriaNetmotilityAbility to perform movementyes78.3
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.9
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe69.6

External links

@ref: 5629

culture collection no.: DSM 15132, ATCC 33564, CDC 0075-80, IMET 12291, CCUG 13625, NCTC 11640, LMG 17719, CIP 101886, JCM 1283, BCRC 15890, CAIM 625, CDC 75-80, CECT 5069, LMG 13542

straininfo link

  • @ref: 86218
  • straininfo: 7659

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7076812Identification of Vibrio hollisae sp. nov. from patients with diarrhea.Hickman FW, Farmer JJ 3rd, Hollis DG, Fanning GR, Steigerwalt AG, Weaver RE, Brenner DJJ Clin Microbiol10.1128/jcm.15.3.395-401.19821982Culture Media, DNA, Bacterial/analysis, Diarrhea/*microbiology, Humans, Vibrio/*classification/cytology/metabolismCultivation
Metabolism8013878Identification of the siderophores from Vibrio hollisae and Vibrio mimicus as aerobactin.Okujo N, Yamamoto SFEMS Microbiol Lett10.1111/j.1574-6968.1994.tb06824.x1994Bacterial Outer Membrane Proteins/metabolism, Culture Media, Ferric Compounds, Humans, Hydroxamic Acids/*chemistry/isolation & purification/metabolism, Magnetic Resonance Spectroscopy, Siderophores/*chemistry/isolation & purification/metabolism, Spectrometry, Mass, Fast Atom Bombardment, Vibrio/*chemistry/growth & developmentCultivation
Pathogenicity10347079Response of pathogenic Vibrio species to high hydrostatic pressure.Berlin DL, Herson DS, Hicks DT, Hoover DGAppl Environ Microbiol10.1128/AEM.65.6.2776-2780.19991999Colony Count, Microbial, Disinfection/methods, Humans, *Hydrostatic Pressure, Vibrio/growth & development/isolation & purification/*physiology, Vibrio Infections/microbiologyEnzymology
Phylogeny13130058Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov.Thompson FL, Hoste B, Vandemeulebroecke K, Swings JInt J Syst Evol Microbiol10.1099/ijs.0.02660-02003DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/metabolism, Vibrionaceae/*classification/genetics/metabolismGenetics
Metabolism16809025Identification and transcriptional organization of aerobactin transport and biosynthesis cluster genes of Vibrio hollisae.Suzuki K, Tanabe T, Moon YH, Funahashi T, Nakao H, Narimatsu S, Yamamoto SRes Microbiol10.1016/j.resmic.2006.05.0012006Amino Acid Sequence, Base Sequence, *Genes, Bacterial, Hydroxamic Acids/*metabolism, Iron/metabolism, Molecular Sequence Data, *Multigene Family, Phylogeny, Promoter Regions, Genetic, Protein Transport, Vibrio/genetics/*metabolismGenetics
Genetics22544255Novel metagenome-derived, cold-adapted alkaline phospholipase with superior lipase activity as an intermediate between phospholipase and lipase.Lee MH, Oh KH, Kang CH, Kim JH, Oh TK, Ryu CM, Yoon JHAppl Environ Microbiol10.1128/AEM.00260-122012Amino Acid Sequence, Cloning, Molecular, Cold Temperature, *Genomic Library, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Hydrolysis, Lipase/genetics/*metabolism, Metagenome, *Metagenomics, Molecular Sequence Data, Phospholipases A/genetics/*metabolism, Phylogeny, Sequence Analysis, DNA, Triolein/metabolismMetabolism
Phylogeny24465608Grimontia indica AK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus.Singh A, Vaidya B, Khatri I, Srinivas TN, Subramanian S, Korpole S, Pinnaka AKPLoS One10.1371/journal.pone.00855902014Bacterial Typing Techniques, DNA, Bacterial/*genetics, DNA, Ribosomal/genetics, India, Molecular Sequence Annotation, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Vibrionaceae/classification/*genetics/isolation & purification/*pathogenicityPhenotype
Phylogeny27125858Grimontia celer sp. nov., from sea water.Pujalte MJ, Lucena T, Rodrigo-Torres L, La Mura A, Ruvira MA, Arahal DRInt J Syst Evol Microbiol10.1099/ijsem.0.0011192016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Spain, Vibrionaceae/*classification/genetics/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5629Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15132)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15132
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40305Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/13510
45993Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13625)https://www.ccug.se/strain?id=13625
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86218Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7659.1StrainInfo: A central database for resolving microbial strain identifiers
119930Curators of the CIPCollection of Institut Pasteur (CIP 101886)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101886
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1