Grimontia hollisae 75-80 is an aerobe, Gram-negative, motile bacterium that was isolated from human faeces.
Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order "Vibrionales" |
| Family Vibrionaceae |
| Genus Grimontia |
| Species Grimontia hollisae |
| Full scientific name Grimontia hollisae (Hickman et al. 1982) Thompson et al. 2003 |
| Synonyms (1) |
| BacDive ID | Other strains from Grimontia hollisae (4) | Type strain |
|---|---|---|
| 135535 | G. hollisae VH-1 (AMC), CIP 104354, LMG 21538 | |
| 161271 | G. hollisae JCM 1284, ATCC 33565, CCM 3675, CDC 921-79, ... | |
| 161272 | G. hollisae JCM 1285, CCM 3676, CDC 519-81 | |
| 161273 | G. hollisae JCM 1286, CDC 623-81 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5629 | REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) | Medium recipe at MediaDive | Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 40305 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 119930 | CIP Medium 13 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.645 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 119930 | 16947 ChEBI | citrate | - | carbon source | |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68374 | 18024 ChEBI | D-galacturonic acid | - | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | - | builds acid from | from API ID32E |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68374 | 16899 ChEBI | D-mannitol | - | builds acid from | from API ID32E |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68368 | 16899 ChEBI | D-mannitol | - | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 119930 | 17234 ChEBI | glucose | + | fermentation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68374 | 30849 ChEBI | L-arabinose | - | builds acid from | from API ID32E |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68374 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API ID32E |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 119930 | 17716 ChEBI | lactose | - | fermentation | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68374 | 25094 ChEBI | lysine | - | degradation | from API ID32E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | - | builds acid from | from API ID32E |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | + | assimilation | from API 20NE |
| 119930 | 17632 ChEBI | nitrate | + | reduction | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 119930 | 16301 ChEBI | nitrite | - | reduction | |
| 68374 | 18257 ChEBI | ornithine | - | degradation | from API ID32E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68374 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API ID32E |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 119930 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68374 | 27082 ChEBI | trehalose | - | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | + | energy source | from API ID32E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119930 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68374 | alpha-galactosidase | - | 3.2.1.22 | from API ID32E |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119930 | amylase | - | ||
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119930 | beta-galactosidase | + | 3.2.1.23 | |
| 68374 | beta-galactosidase | - | 3.2.1.23 | from API ID32E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68374 | beta-glucosidase | + | 3.2.1.21 | from API ID32E |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68374 | beta-glucuronidase | - | 3.2.1.31 | from API ID32E |
| 119930 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 68368 | cytochrome oxidase | + | 1.9.3.1 | from API 20E |
| 119930 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119930 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68368 | gelatinase | - | from API 20E | |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68374 | lipase | + | from API ID32E | |
| 68382 | lipase (C 14) | - | from API zym | |
| 119930 | lysine decarboxylase | - | 4.1.1.18 | |
| 68374 | lysine decarboxylase | - | 4.1.1.18 | from API ID32E |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119930 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68374 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 119930 | oxidase | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119930 | urease | + | 3.5.1.5 | |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | hydrogen production | 100 | 5 of 5 | ||
| 66794 | photosynthesis | 100 | 14 of 14 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | tetrahydrofolate metabolism | 100 | 14 of 14 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | glutamate and glutamine metabolism | 89.29 | 25 of 28 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | purine metabolism | 87.23 | 82 of 94 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | NAD metabolism | 83.33 | 15 of 18 | ||
| 66794 | pyrimidine metabolism | 82.22 | 37 of 45 | ||
| 66794 | vitamin B6 metabolism | 81.82 | 9 of 11 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | lipid A biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | vitamin B1 metabolism | 76.92 | 10 of 13 | ||
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | histidine metabolism | 72.41 | 21 of 29 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | tyrosine metabolism | 71.43 | 10 of 14 | ||
| 66794 | urea cycle | 69.23 | 9 of 13 | ||
| 66794 | leucine metabolism | 69.23 | 9 of 13 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | alanine metabolism | 65.52 | 19 of 29 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | lipid metabolism | 64.52 | 20 of 31 | ||
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | ||
| 66794 | citric acid cycle | 64.29 | 9 of 14 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | lysine metabolism | 61.9 | 26 of 42 | ||
| 66794 | methionine metabolism | 61.54 | 16 of 26 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | non-pathway related | 60.53 | 23 of 38 | ||
| 66794 | oxidative phosphorylation | 60.44 | 55 of 91 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | propionate fermentation | 60 | 6 of 10 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | cellulose degradation | 60 | 3 of 5 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | arginine metabolism | 58.33 | 14 of 24 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | nitrate assimilation | 55.56 | 5 of 9 | ||
| 66794 | degradation of pentoses | 53.57 | 15 of 28 | ||
| 66794 | glycogen biosynthesis | 50 | 2 of 4 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | denitrification | 50 | 1 of 2 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | ||
| 66794 | polyamine pathway | 47.83 | 11 of 23 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | phenol degradation | 45 | 9 of 20 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | myo-inositol biosynthesis | 40 | 4 of 10 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | degradation of sugar acids | 36 | 9 of 25 | ||
| 66794 | methane metabolism | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | androgen and estrogen metabolism | 31.25 | 5 of 16 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 30 | 3 of 10 | ||
| 66794 | starch degradation | 30 | 3 of 10 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | carotenoid biosynthesis | 27.27 | 6 of 22 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | vitamin E metabolism | 25 | 1 of 4 | ||
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | ||
| 66794 | vitamin B12 metabolism | 23.53 | 8 of 34 | ||
| 66794 | phenylpropanoid biosynthesis | 23.08 | 3 of 13 | ||
| 66794 | ascorbate metabolism | 22.73 | 5 of 22 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 45993 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45993 | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119930 | not determinedn.d. | + | - | - | + | + | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | +/- | - | - | + | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45993 | - | - | - | - | - | - | - | + | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence X74707 (>99% sequence identity) for Grimontia hollisae subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM155825v2 assembly for Grimontia hollisae FDAARGOS_111 | complete | 673 | 96.83 | ||||
| 66792 | Grimontia hollisae strain ATCC 33564 | complete | 673 | 93.2 | ||||
| 66792 | 50450_F01 assembly for Grimontia hollisae NCTC11640 | contig | 673 | 77.74 | ||||
| 67770 | ASM17651v1 assembly for Grimontia hollisae CIP 101886 | contig | 675812 | 75.88 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Grimontia hollisae 16S ribosomal RNA gene, partial sequence | DQ068939 | 1452 | 673 | ||
| 20218 | Grimontia hollisae 16S ribosomal RNA gene, partial sequence | HM771353 | 1470 | 673 | ||
| 20218 | V.hollisae 16S ribosomal RNA | X56583 | 1483 | 673 | ||
| 20218 | V.hollisae(ATCC 33564T) gene for 16S ribosomal RNA | X74707 | 1465 | 673 | ||
| 20218 | Vibrio hollisae 16S rRNA | D11206 | 171 | 673 | ||
| 20218 | Vibrio hollisae 16S rRNA | D11255 | 211 | 673 | ||
| 20218 | Vibrio hollisae 16S rRNA | D11304 | 191 | 673 | ||
| 20218 | Vibrio hollisae partial 16S rRNA gene, type strain LMG 17719T | AJ514909 | 1504 | 673 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 49.8 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 58.42 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 60.37 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.65 | no |
| 125439 | motility | BacteriaNetⓘ | no | 60.71 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.14 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.07 | no |
| 125438 | aerobic | aerobicⓘ | no | 65.80 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 86.53 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | The Pelagic Bacterium Paraphotobacterium marinum Has the Smallest Complete Genome Within the Family Vibrionaceae. | Huang Z, Liu Z, Shao Z. | Front Microbiol | 10.3389/fmicb.2017.01994 | 2017 | |
| Potential antitumor therapeutic application of Grimontia hollisae thermostable direct hemolysin mutants. | Huang SC, Wang YK, Huang WT, Kuo TM, Yip BS, Li TH, Wu TK. | Cancer Sci | 10.1111/cas.12623 | 2015 | ||
| Enzymology | Purification, crystallization and preliminary X-ray analysis of a thermostable direct haemolysin from Grimontia hollisae. | Wang YK, Huang SC, Wu YF, Chen YC, Chen WH, Lin YL, Nayak M, Lin YR, Li TT, Wu TK. | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/s1744309110050219 | 2011 | |
| Site-directed mutations of thermostable direct hemolysin from Grimontia hollisae alter its arrhenius effect and biophysical properties. | Wang YK, Huang SC, Wu YF, Chen YC, Lin YL, Nayak M, Lin YR, Chen WH, Chiu YR, Li TT, Yeh BS, Wu TK. | Int J Biol Sci | 10.7150/ijbs.7.333 | 2011 | ||
| Rugosity in Grimontia hollisae. | Curtis SK, Kothary MH, Blodgett RJ, Raybourne RB, Ziobro GC, Tall BD. | Appl Environ Microbiol | 10.1128/aem.02553-06 | 2007 | ||
| The thermostable direct hemolysin from Grimontia hollisae causes acute hepatotoxicity in vitro and in vivo. | Lin YR, Chen YL, Wang KB, Wu YF, Wang YK, Huang SC, Liu TA, Nayak M, Yip BS, Wu TK. | PLoS One | 10.1371/journal.pone.0056226 | 2013 | ||
| RNA colony blot hybridization method for enumeration of culturable Vibrio cholerae and Vibrio mimicus bacteria. | Grim CJ, Zo YG, Hasan NA, Ali A, Chowdhury WB, Islam A, Rashid MH, Alam M, Morris JG, Huq A, Colwell RR. | Appl Environ Microbiol | 10.1128/aem.02007-08 | 2009 | ||
| Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia. | Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N, Huq A, Colwell RR, Tediashvili M. | Front Public Health | 10.3389/fpubh.2015.00232 | 2015 | ||
| Enzymology | Cloning and sequencing of the ompA gene of Enterobacter sakazakii and development of an ompA-targeted PCR for rapid detection of Enterobacter sakazakii in infant formula. | Mohan Nair MK, Venkitanarayanan KS. | Appl Environ Microbiol | 10.1128/aem.72.4.2539-2546.2006 | 2006 | |
| PCR-based method for targeting 16S-23S rRNA intergenic spacer regions among Vibrio species. | Hoffmann M, Brown EW, Feng PC, Keys CE, Fischer M, Monday SR. | BMC Microbiol | 10.1186/1471-2180-10-90 | 2010 | ||
| CRISPR-Cas and Contact-Dependent Secretion Systems Present on Excisable Pathogenicity Islands with Conserved Recombination Modules. | Carpenter MR, Kalburge SS, Borowski JD, Peters MC, Colwell RR, Boyd EF. | J Bacteriol | 10.1128/jb.00842-16 | 2017 | ||
| Plesiomonas shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome. | Adam Y, Brezellec P, Espinosa E, Besombes A, Naquin D, Paly E, Possoz C, van Dijk E, Barre FX, Ferat JL. | Genome Biol Evol | 10.1093/gbe/evac011 | 2022 | ||
| Pseudomonas and Curtobacterium Strains from Olive Rhizosphere Characterized and Evaluated for Plant Growth Promoting Traits. | Schillaci M, Raio A, Sillo F, Zampieri E, Mahmood S, Anjum M, Khalid A, Centritto M. | Plants (Basel) | 10.3390/plants11172245 | 2022 | ||
| Prevalence and characterization of Ice Nucleation Active (INA) bacteria from rainwater in Indonesia. | Khosasih V, Prasetyo N, Sudianto E, Waturangi DE. | BMC Microbiol | 10.1186/s12866-022-02521-1 | 2022 | ||
| Genetics | Genome sequence of Dichelobacter nodosus JKS-07B isolate from J&K, India associated with virulent footrot of sheep. | Qureshi S, Wani SA, Farooq S, Kashoo Z, Bhat B, Isfaqul Hussain M, Habib A, Altaf Bhat M, Khan SM, Pandit AA, Malla JA, Dar BA. | Sci Prog | 10.1177/00368504211057678 | 2021 | |
| Metabolism | Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone. | Shen YQ, Bonnot F, Imsand EM, RoseFigura JM, Sjolander K, Klinman JP. | Biochemistry | 10.1021/bi201763d | 2012 | |
| Genetics | Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak. | Haley BJ, Choi SY, Grim CJ, Onifade TJ, Cinar HN, Tall BD, Taviani E, Hasan NA, Abdullah AH, Carter L, Sahu SN, Kothary MH, Chen A, Baker R, Hutchinson R, Blackmore C, Cebula TA, Huq A, Colwell RR. | PLoS One | 10.1371/journal.pone.0086264 | 2014 | |
| Metabolism | Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships. | Cai L, Tan D, Aibaidula G, Dong XR, Chen JC, Tian WD, Chen GQ. | Microb Cell Fact | 10.1186/1475-2859-10-88 | 2011 | |
| Metabolism | GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease. | Haft DH, Varghese N. | PLoS One | 10.1371/journal.pone.0028886 | 2011 | |
| A novel extracellular metallopeptidase domain shared by animal host-associated mutualistic and pathogenic microbes. | Nakjang S, Ndeh DA, Wipat A, Bolam DN, Hirt RP. | PLoS One | 10.1371/journal.pone.0030287 | 2012 | ||
| Metabolism | Nitrate and periplasmic nitrate reductases. | Sparacino-Watkins C, Stolz JF, Basu P. | Chem Soc Rev | 10.1039/c3cs60249d | 2014 | |
| Genetics | Novel metagenome-derived, cold-adapted alkaline phospholipase with superior lipase activity as an intermediate between phospholipase and lipase. | Lee MH, Oh KH, Kang CH, Kim JH, Oh TK, Ryu CM, Yoon JH | Appl Environ Microbiol | 10.1128/AEM.00260-12 | 2012 | |
| Metabolism | Identification and transcriptional organization of aerobactin transport and biosynthesis cluster genes of Vibrio hollisae. | Suzuki K, Tanabe T, Moon YH, Funahashi T, Nakao H, Narimatsu S, Yamamoto S | Res Microbiol | 10.1016/j.resmic.2006.05.001 | 2006 | |
| Phylogeny | Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov. | Thompson FL, Hoste B, Vandemeulebroecke K, Swings J | Int J Syst Evol Microbiol | 10.1099/ijs.0.02660-0 | 2003 | |
| Pathogenicity | Response of pathogenic Vibrio species to high hydrostatic pressure. | Berlin DL, Herson DS, Hicks DT, Hoover DG | Appl Environ Microbiol | 10.1128/AEM.65.6.2776-2780.1999 | 1999 | |
| Metabolism | Identification of the siderophores from Vibrio hollisae and Vibrio mimicus as aerobactin. | Okujo N, Yamamoto S | FEMS Microbiol Lett | 10.1111/j.1574-6968.1994.tb06824.x | 1994 | |
| Phylogeny | Grimontia celer sp. nov., from sea water. | Pujalte MJ, Lucena T, Rodrigo-Torres L, La Mura A, Ruvira MA, Arahal DR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001119 | 2016 | |
| Phylogeny | Grimontia indica AK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus. | Singh A, Vaidya B, Khatri I, Srinivas TN, Subramanian S, Korpole S, Pinnaka AK | PLoS One | 10.1371/journal.pone.0085590 | 2014 | |
| Phylogeny | Identification of Vibrio hollisae sp. nov. from patients with diarrhea. | Hickman FW, Farmer JJ 3rd, Hollis DG, Fanning GR, Steigerwalt AG, Weaver RE, Brenner DJ | J Clin Microbiol | 10.1128/jcm.15.3.395-401.1982 | 1982 |
| #5629 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15132 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40305 | ; Curators of the CIP; |
| #45993 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13625 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68374 | Automatically annotated from API ID32E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119930 | Collection of Institut Pasteur ; Curators of the CIP; CIP 101886 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive17219.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data