Strain identifier
BacDive ID: 17200
Type strain: 
Species: Sporomusa silvacetica
Strain Designation: DG-1
Strain history: <- H. L. Drake, Universität Bayreuth, Lehrstuhl für Ökologische Mikrobiologie, Bayreuth, Germany; DG-1 <- C. H. Kuhner and A. Grießhammer {1995}
NCBI tax ID(s): 1123289 (strain), 55504 (species)
version 8.1 (current version)
General
@ref: 4031
BacDive-ID: 17200
DSM-Number: 10669
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Sporomusa silvacetica DG-1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from soil of beech forest.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 55504 | species |
| 1123289 | strain |
strain history
- @ref: 4031
- history: <- H. L. Drake, Universität Bayreuth, Lehrstuhl für Ökologische Mikrobiologie, Bayreuth, Germany; DG-1 <- C. H. Kuhner and A. Grießhammer {1995}
doi: 10.13145/bacdive17200.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Sporomusa
- species: Sporomusa silvacetica
- full scientific name: Sporomusa silvacetica Kuhner et al. 1997
@ref: 4031
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Sporomusa
species: Sporomusa silvacetica
full scientific name: Sporomusa silvacetica Kuhner et al. 1997
strain designation: DG-1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.342 | |
| 69480 | 99.806 | negative |
Culture and growth conditions
culture medium
- @ref: 4031
- name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/311c
- composition: Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c) Composition: D-Fructose 4.97512 g/l NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water
culture temp
- @ref: 4031
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 4031 | anaerobe | |
| 69480 | anaerobe | 99.406 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.289
Isolation, sampling and environmental information
isolation
- @ref: 4031
- sample type: soil of beech forest
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 4031
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4031
- description: S.silvacetica 16S rRNA gene
- accession: Y09976
- length: 1481
- database: ena
- NCBI tax ID: 55504
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sporomusa silvacetica DSM 10669 | GCA_002257705 | contig | ncbi | 1123289 |
| 66792 | Sporomusa silvacetica DSM 10669 | 1123289.3 | wgs | patric | 1123289 |
| 66792 | Sporomusa silvacetica DSM 10669 | 2835173708 | draft | img | 55504 |
GC content
- @ref: 4031
- GC-content: 42.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 69 | no |
| motile | yes | 88.636 | no |
| flagellated | yes | 53.825 | no |
| gram-positive | no | 95.448 | no |
| anaerobic | yes | 98.695 | no |
| halophile | no | 98.09 | no |
| spore-forming | yes | 83.842 | no |
| thermophile | no | 97.751 | yes |
| glucose-util | yes | 74.257 | no |
| aerobic | no | 95.701 | no |
| glucose-ferment | no | 72.898 | no |
External links
@ref: 4031
culture collection no.: DSM 10669
straininfo link
- @ref: 86199
- straininfo: 45422
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9103621 | Sporomusa silvacetica sp, nov., an acetogenic bacterium isolated from aggregated forest soil. | Kuhner CH, Frank C, Griesshammer A, Schmittroth M, Acker G, Gossner A, Drake HL | Int J Syst Bacteriol | 10.1099/00207713-47-2-352 | 1997 | Base Composition, Clostridium/*classification/genetics/ultrastructure, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fermentation, Gram-Positive Bacteria/*classification/genetics/ultrastructure, Microscopy, Electron, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology | Genetics |
| 28935741 | Insights into the Genome of the Anaerobic Acetogen Sporomusa silvacetica DSM 10669. | Humphreys JR, Daniel R, Poehlein A | Genome Announc | 10.1128/genomeA.00983-17 | 2017 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4031 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10669) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10669 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86199 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45422.1 | StrainInfo: A central database for resolving microbial strain identifiers |