Sporomusa silvacetica (DSM 10669, DG-1)

Name: Sporomusa silvacetica (DSM 10669, DG-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17200

Type strain

Strain Designation DG-1

Culture col. no. DSM 10669 DG-1

NCBI tax ID(s) 1123289 55504

Special Collections DSMZ

Links

Sporomusa silvacetica DG-1 is an anaerobe, mesophilic prokaryote that was isolated from soil of beech forest.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 45422

ATCC 700346,DSM 10669

@ref 20215

Last LPSN update 2025-12-16 09:51:02

Domain Bacillati

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Sporomusaceae

Genus Sporomusa

Species Sporomusa silvacetica

Full scientific name Sporomusa silvacetica Kuhner et al. 1997

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4031	SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)		Medium recipe at MediaDive	Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c) Composition: D-Fructose 4.97512 g/l NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4031	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

4031

Oxygen toleranceanaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	ribulose monophosphate pathway	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	hydrogen production	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	100	8 of 8
66794	acetoin degradation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	suberin monomers biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	lactate fermentation	100	4 of 4
66794	serine metabolism	100	9 of 9
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	isoleucine metabolism	100	8 of 8
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	urea cycle	92.31	12 of 13
66794	propionate fermentation	90	9 of 10
66794	myo-inositol biosynthesis	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	flavin biosynthesis	86.67	13 of 15
66794	alanine metabolism	86.21	25 of 29
66794	citric acid cycle	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	lipid A biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	pyrimidine metabolism	77.78	35 of 45
66794	purine metabolism	77.66	73 of 94
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	histidine metabolism	75.86	22 of 29
66794	toluene degradation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	starch degradation	70	7 of 10
66794	leucine metabolism	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	degradation of sugar acids	68	17 of 25
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	66.67	4 of 6
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	methane metabolism	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	lysine metabolism	64.29	27 of 42
66794	glutathione metabolism	64.29	9 of 14
66794	arginine metabolism	62.5	15 of 24
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	factor 420 biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	O-antigen biosynthesis	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	lipid metabolism	58.06	18 of 31
66794	non-pathway related	57.89	22 of 38
66794	tryptophan metabolism	57.89	22 of 38
66794	polyamine pathway	56.52	13 of 23
66794	nitrate assimilation	55.56	5 of 9
66794	allantoin degradation	55.56	5 of 9
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	proline metabolism	54.55	6 of 11
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	carnitine metabolism	50	4 of 8
66794	cyclohexanol degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	vitamin E metabolism	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	phenol degradation	50	10 of 20
66794	ethanol fermentation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	sulfate reduction	46.15	6 of 13
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	degradation of pentoses	39.29	11 of 28
66794	degradation of hexoses	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	cholesterol biosynthesis	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4031	soil of beech forest	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4031	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	SPSIL assembly for Sporomusa silvacetica DSM 10669	complete	GCA_002257705	1123289.3	2835173708	1123289	95.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4031	S.silvacetica 16S rRNA gene	Y09976	1481		55504

GC content

4031

GC-content (mol%)42.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporomusa silvacetica DSM 10669
NCBI: GCA_002257705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	64.40	no
125439	motility	BacteriaNetⓘ	yes	54.20	no
125439	gram_stain	BacteriaNetⓘ	positive	75.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	80.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporomusa silvacetica DSM 10669
PATRIC: 1123289.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	83.49	no
125438	anaerobic	anaerobicⓘ	yes	79.99	yes
125438	spore-forming	spore-formingⓘ	yes	70.29	no
125438	aerobic	aerobicⓘ	no	88.22	no
125438	thermophilic	thermophileⓘ	no	89.78	yes
125438	flagellated	motile2+ⓘ	yes	75.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Dosage constraint of the ribosome-associated molecular chaperone drives the evolution and fates of its duplicates in bacteria.	Wan T, Zhuo L, Pan Z, Chen R-y, Ma H, Cao Y, Wang J, Wang J-j, Hu W-f, Lai Y-j, Hayat M, Li Y-z.	mBio	10.1128/mbio.01994-24	2024
Genetics	Tartrate fermentation with H₂ production by a new member of Sporomusaceae enriched from rice paddy soil.	Pereira-Mora L, Guerrero LD, Erijman L, Fernandez-Scavino A.	Appl Environ Microbiol	10.1128/aem.02351-23	2024
	Energy conservation under extreme energy limitation: the role of cytochromes and quinones in acetogenic bacteria.	Rosenbaum FP, Muller V.	Extremophiles	10.1007/s00792-021-01241-0	2021
Metabolism	The Sporomusa type Nfn is a novel type of electron-bifurcating transhydrogenase that links the redox pools in acetogenic bacteria.	Kremp F, Roth J, Muller V.	Sci Rep	10.1038/s41598-020-71038-2	2020
Metabolism	Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.	Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.	Appl Environ Microbiol	10.1128/aem.02642-10	2011
Metabolism	Tolerance and metabolic response of acetogenic bacteria toward oxygen.	Karnholz A, Kusel K, Gossner A, Schramm A, Drake HL.	Appl Environ Microbiol	10.1128/aem.68.2.1005-1009.2002	2002
Enzymology	Carbonic anhydrase in Acetobacterium woodii and other acetogenic bacteria.	Braus-Stromeyer SA, Schnappauf G, Braus GH, Gossner AS, Drake HL.	J Bacteriol	10.1128/jb.179.22.7197-7200.1997	1997
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018
	Insights into the Genome of the Anaerobic Acetogen Sporomusa silvacetica DSM 10669.	Humphreys JR, Daniel R, Poehlein A	Genome Announc	10.1128/genomeA.00983-17	2017
Phylogeny	Sporomusa silvacetica sp, nov., an acetogenic bacterium isolated from aggregated forest soil.	Kuhner CH, Frank C, Griesshammer A, Schmittroth M, Acker G, Gossner A, Drake HL	Int J Syst Bacteriol	10.1099/00207713-47-2-352	1997

References

#4031	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10669
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Sporomusa silvacetica (DSM 10669, DG-1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002257705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media