Archive BacDiveID:10.13145/bacdive17188.20230509.8.1

Strain identifier

BacDive ID: 17188

Type strain:

Species: Sporomusa acidovorans

Strain Designation: Mol

Strain history: <- B. Ollivier, Mol

NCBI tax ID(s): 1123286 (strain), 112900 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 1307

BacDive-ID: 17188

DSM-Number: 3132

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile

description: Sporomusa acidovorans Mol is an anaerobe, spore-forming, mesophilic bacterium that was isolated from effluent from alcohol-distillery plant.

NCBI tax id

NCBI tax id	Matching level
1123286	strain
112900	species

strain history

@ref: 1307
history: <- B. Ollivier, Mol

doi: 10.13145/bacdive17188.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Sporomusa
species: Sporomusa acidovorans
full scientific name: Sporomusa acidovorans Ollivier et al. 1990

@ref: 1307

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Sporomusaceae

genus: Sporomusa

species: Sporomusa acidovorans

full scientific name: Sporomusa acidovorans Ollivier et al. 1990

strain designation: Mol

type strain: yes

Morphology

cell morphology

@ref: 69480
motility: yes
confidence: 94.473

Culture and growth conditions

culture medium

@ref: 1307
name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)
growth: yes
link: https://mediadive.dsmz.de/medium/311c
composition: Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c) Composition: D-Fructose 4.97512 g/l NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

culture temp

@ref: 1307
growth: positive
type: growth
temperature: 35
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
1307	anaerobe
69480	anaerobe	98.651

spore formation

@ref: 69480
spore formation: yes
confidence: 99.999

Isolation, sampling and environmental information

isolation

@ref: 1307
sample type: effluent from alcohol-distillery plant
country: France
origin.country: FRA
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Fermented
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Industrial wastewater
#Engineered	#Food production	#Beverage

taxonmaps

@ref: 69479
File name: preview.99_98247.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_208;96_40012;97_51028;98_67247;99_98247&stattab=map
Last taxonomy: Sporomusa acidovorans subclade
16S sequence: HE966438
Sequence Identity:
Total samples: 526
soil counts: 268
aquatic counts: 165
animal counts: 65
plant counts: 28

Safety information

risk assessment

@ref: 1307
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Sporomusa acidovorans 16S rRNA gene, strain DSM 3132 Type	AJ279798	1528	ena	112900
1307	Sporomusa acidovorans partial 16S rRNA gene, strain DSM 3132, clone 58	HE966438	1631	ena	112900
1307	Sporomusa acidovorans partial 16S rRNA gene, strain DSM 3132, clone 30	HE966437	1544	ena	112900
1307	Sporomusa acidovorans partial 16S rRNA gene, strain DSM 3132, clone 28	HE966436	1543	ena	112900
1307	Sporomusa acidovorans partial 16S rRNA gene, strain DSM 3132, clone 51	HE966435	1543	ena	112900
1307	Sporomusa acidovorans partial 16S rRNA gene, strain DSM 3132, clone 55	HE966434	1543	ena	112900
1307	Sporomusa acidovorans partial 16S rRNA gene, strain DSM 3132, clone 56	HE966433	1543	ena	112900

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Sporomusa acidovorans Mol	GCA_900101845	scaffold	ncbi	112900
66792	Sporomusa acidovorans DSM 3132	GCA_002257695	contig	ncbi	1123286
66792	Sporomusa acidovorans DSM 3132	1123286.3	wgs	patric	1123286
66792	Sporomusa acidovorans strain Mol	112900.4	wgs	patric	112900
66792	Sporomusa acidovorans DSM 3132	2622736588	draft	img	112900
66792	Sporomusa acidovorans DSM 3132	2835150038	draft	img	112900

GC content

@ref: 1307
GC-content: 42.0

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	87	no
motile	yes	84.607	no
flagellated	no	53.877	no
gram-positive	no	96.354	no
anaerobic	yes	98.548	yes
aerobic	no	96.216	yes
halophile	no	95.686	no
spore-forming	yes	81.129	no
thermophile	no	97.754	yes
glucose-util	yes	73.388	no
glucose-ferment	no	62.608	no

External links

@ref: 1307

culture collection no.: DSM 3132, ATCC 49682

straininfo link

@ref: 86187
straininfo: 46116

literature

topic: Genetics
Pubmed-ID: 28935740
title: Genome Sequence of the Homoacetogenic, Gram-Negative, Endospore-Forming Bacterium Sporomusa acidovorans DSM 3132.
authors: Humphreys JR, Daniel R, Poehlein A
journal: Genome Announc
DOI: 10.1128/genomeA.00981-17
year: 2017

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
1307	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3132)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-3132
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86187	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID46116.1	StrainInfo: A central database for resolving microbial strain identifiers