Strain identifier

BacDive ID: 17162

Type strain: Yes

Species: Selenomonas dianae

Strain history: ATCC 43527 <-- L. V. H. Moore VPI D19A-11.

NCBI tax ID(s): 1316584 (strain), 135079 (species)

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General

@ref: 8150

BacDive-ID: 17162

DSM-Number: 19527

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Selenomonas dianae DSM 19527 is an anaerobe, mesophilic bacterium that was isolated from human gingival crevice.

NCBI tax id

NCBI tax idMatching level
135079species
1316584strain

strain history

@refhistory
8150<- JCM <- ATCC <- L. V. Moore; VPI D19A-11 <- W. E. C. Moore
67770ATCC 43527 <-- L. V. H. Moore VPI D19A-11.

doi: 10.13145/bacdive17162.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Selenomonadales
  • family: Selenomonadaceae
  • genus: Selenomonas
  • species: Selenomonas dianae
  • full scientific name: Selenomonas dianae Moore et al. 1987

@ref: 8150

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Selenomonadaceae

genus: Selenomonas

species: Selenomonas dianae

full scientific name: Selenomonas dianae Moore et al. 1987

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8150COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8150CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
8150positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 8150
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8150--++-+----------+/-------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
8150human gingival creviceUSAUSANorth America
67770Supragingival flora coronal to an affected site in a person with juvenile periodontitis

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Gingiva
#Host Body-Site#Oral cavity and airways#Tooth

Safety information

risk assessment

  • @ref: 8150
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
8150Selenomonas dianae 16S ribosomal RNA gene, partial sequenceAF2878011494ena135079
67770Selenomonas dianae gene for 16S ribosomal RNA, partial sequence, strain: JCM 8542LC0372181281ena135079

GC content

@refGC-contentmethod
815053
6777053thermal denaturation, midpoint method (Tm)

External links

@ref: 8150

culture collection no.: DSM 19527, ATCC 43527, JCM 8542, VPI D19A-11, BCRC 14419

straininfo link

  • @ref: 86161
  • straininfo: 41894

literature

  • topic: Phylogeny
  • Pubmed-ID: 34612809
  • title: Isolation and description of Selenomonas timonae sp. nov., a novel Selenomonas species detected in a gingivitis patient.
  • authors: Antezack A, Boxberger M, Ben Khedher M, La Scola B, Monnet-Corti V
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005040
  • year: 2021
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, France, *Gingivitis/microbiology, Humans, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Selenomonas/classification/isolation & purification, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
8150Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19527)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19527
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
86161Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41894.1StrainInfo: A central database for resolving microbial strain identifiers