Selenomonas dianae (DSM 19527, ATCC 43527, JCM 8542)

Name: Selenomonas dianae (DSM 19527, ATCC 43527, JCM 8542)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17162

Type strain

Culture col. no. DSM 19527 ATCC 43527 JCM 8542 VPI D19A-11 BCRC 14419

NCBI tax ID(s) 135079

Special Collections DSMZ JCM

History DSMZ <- JCM <- ATCC <- L. V. Moore; VPI D19A-11 <- W. E. C. Moore JCM <-- ATCC 43527 <-- L. V. H. Moore VPI D19A-11.

Links

Selenomonas dianae DSM 19527 is an anaerobe bacterium that was isolated from human gingival crevice.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41894

ATCC 43527,JCM 8542,CCRC 14419,BCRC 14419,DSM 19527

@ref 20215

Last LPSN update 2026-05-29 08:28:57

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Selenomonadaceae

Genus Selenomonas

Species Selenomonas dianae

Full scientific name Selenomonas dianae Moore et al. 1987

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8150	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8150	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8150	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8150	anaerobe
125439	facultative anaerobe	93.372

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8150	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
8150	human gingival crevice	Homo sapiens	USA	USA	North America
67770	Supragingival flora coronal to an affected site in a person with juvenile periodontitis	Homo sapiens

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8150	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM3064422v1 assembly for Selenomonas dianae ATCC 43527	complete	GCA_030644225	135079.3	135079	95.06
124043	ASM3952160v1 assembly for Selenomonas dianae JCM 8542	scaffold	GCA_039521605		135079	75.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8150	Selenomonas dianae 16S ribosomal RNA gene, partial sequence	AF287801	1494		135079
67770	Selenomonas dianae gene for 16S ribosomal RNA, partial sequence, strain: JCM 8542	LC037218	1281		135079

GC content

@ref	GC-content (mol%)	Method
8150	53
67770	53	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3064422v1 assembly for Selenomonas dianae ATCC 43527
NCBI: GCA_030644225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.37	no
125439	motility	BacteriaNetⓘ	yes	40.76	no
125439	gram_stain	BacteriaNetⓘ	positive	65.49	no
125439	spore_formation	BacteriaNetⓘ	no	73.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Selenomonas felix sp. nov., a new bacterium isolated from human sputum.	Kuete E, Mbogning Fonkou MD, Mekhalif F, Anani H, Baudoin JP, Raoult D, Bou Khalil JY.	New Microbes New Infect	10.1016/j.nmni.2019.100567	2019
Phylogeny	Isolation and description of Selenomonas timonae sp. nov., a novel Selenomonas species detected in a gingivitis patient.	Antezack A, Boxberger M, Ben Khedher M, La Scola B, Monnet-Corti V	Int J Syst Evol Microbiol	10.1099/ijsem.0.005040	2021

References

#8150	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19527
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Selenomonas dianae (DSM 19527, ATCC 43527, JCM 8542)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030644225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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